RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 ZFATQ9P243 1243 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 NAGPAQ9UK23 515 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 PLAAQ9Y263 795 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 PATL2C9JE40 543 aaKnown RBP5.62□□□□□ -1.51
RIF1-203ENST00000428287 O00370 1275 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 NKRFO15226 690 aaKnown RBP eCLIP5.62□□□□□ -1.51
RIF1-203ENST00000428287 TP73O15350 636 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 TCEA3O75764 348 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 KIF4AO95239 1232 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 NQO1P15559 274 aaKnown RBP5.62□□□□□ -1.51
RIF1-203ENST00000428287 CALML3P27482 149 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 STK4Q13043 487 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 CSGALNACT2Q8N6G5 542 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 TTLL11Q8NHH1 800 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 CAGE1Q8TC20 777 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 AMOTL2Q9Y2J4 779 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 LAD1O00515 517 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 COQ9O75208 318 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 PIM1P11309 404 aaPredicted RBP5.62□□□□□ -1.51
RIF1-203ENST00000428287 TNNC1P63316 161 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 RNF187Q5TA31 235 aaPredicted RBP5.62□□□□□ -1.51
RIF1-203ENST00000428287 MS4A14Q96JA4 679 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 FAM192AQ9GZU8 254 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 CABP5Q9NP86 173 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 LRWD1Q9UFC0 647 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 ESYT3A0FGR9 886 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 EPHB6O15197 1021 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 PABPC4LP0CB38 370 aaKnown RBP5.62□□□□□ -1.51
RIF1-203ENST00000428287 IMPDH2P12268 514 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 PTENP60484 403 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 SNX1Q13596 522 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 CCDC96Q2M329 555 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 LRRC24Q50LG9 513 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 FITM2Q8N6M3 262 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 DCLRE1BQ9H816 532 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 KCNJ14Q9UNX9 436 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 RPS6KL1Q9Y6S9 549 aa5.62□□□□□ -1.51
RIF1-203ENST00000428287 DPPA5A6NC42 116 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 OPLAHO14841 1288 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 SKAP2O75563 359 aaPredicted RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 PDE8BO95263 885 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 GM2AP17900 193 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ITGA6P23229 1130 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ALDH1B1P30837 517 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ZBTB10Q96DT7 871 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.61□□□□□ -1.518e-7■■■□□ 17.6
RIF1-203ENST00000428287 AGAP1Q9UPQ3 857 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 UNC5CO95185 931 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 PENKP01210 267 aaPredicted RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 EIF4A3P38919 411 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 ACVR2BQ13705 512 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 KRT71Q3SY84 523 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 SLC9C1Q4G0N8 1177 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 DUPD1Q68J44 220 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 SPATA21Q7Z572 469 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 KIAA0895Q8NCT3 520 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 C7orf43Q8WVR3 580 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 GATA6Q92908 595 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 P2RX5Q93086 422 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 CENPHQ9H3R5 247 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.61□□□□□ -1.51
RIF1-203ENST00000428287 SEC63Q9UGP8 760 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 USP15Q9Y4E8 981 aaPredicted RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 SNRNP200O75643 2136 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 FAM163BP0C2L3 166 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 GNAZP19086 355 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ADORA1P30542 326 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 MSH2P43246 934 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 FKBP4Q02790 459 aaKnown RBP eCLIP5.61□□□□□ -1.51
RIF1-203ENST00000428287 IRF2BP2Q7Z5L9 587 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 HOOK3Q86VS8 718 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 FAM114A1Q8IWE2 563 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ATP8B4Q8TF62 1192 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 RBM41Q96IZ5 413 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 TMCO1Q9UM00 188 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 TACC3Q9Y6A5 838 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 STRCQ7RTU9 1775 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 BUB1BO60566 1050 aaPredicted RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 CAND2O75155 1236 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ORC2Q13416 577 aaPredicted RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 GIT2Q14161 759 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 TRIM59Q8IWR1 403 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 RBM12BQ8IXT5 1001 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 OXER1Q8TDS5 423 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 HES6Q96HZ4 224 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 SCLT1Q96NL6 688 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 MTFR1LQ9H019 292 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ABCF3Q9NUQ8 709 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 XIRP1Q702N8 1843 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 TRPM7Q96QT4 1865 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 A0A0A6YYK5 440 aaPredicted RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 A0A0G2JS52 829 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ENO4A6NNW6 628 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 GOLGA8AA7E2F4 631 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 DIAPH2O60879 1101 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 GCP02774 474 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ZAP70P43403 619 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 CCDC15Q0P6D6 951 aa5.61□□□□□ -1.51
RIF1-203ENST00000428287 ZC3H3Q8IXZ2 948 aaKnown RBP5.61□□□□□ -1.51
RIF1-203ENST00000428287 LRRC43Q8N309 656 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms