RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NAT10Q9H0A0 1025 aaKnown RBP19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 ABHD16BQ9H3Z7 469 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 TUBE1Q9UJT0 475 aa19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 ZHX1Q9UKY1 873 aaPredicted RBP19.12■□□□□ 0.65
CCDC28B-202ENST00000421922 MYH9P35579 1960 aaKnown RBP19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 WDR81Q562E7 1941 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 SLITRK3O94933 977 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 CCNE2O96020 404 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 HOXC6P09630 235 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 NLRP12P59046 1061 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 ACTR2P61160 394 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 PSMC5P62195 406 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 MAP2K1Q02750 393 aaPredicted RBP19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 DPYDQ12882 1025 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 CUL4BQ13620 913 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 LY6KQ17RY6 165 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 METTL7BQ6UX53 244 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 DHX37Q8IY37 1157 aaKnown RBP19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 GSDMAQ96QA5 445 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 FUCA2Q9BTY2 467 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 CFHR5Q9BXR6 569 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 RNF186Q9NXI6 227 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 DACH1Q9UI36 760 aa19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 DDX41Q9UJV9 622 aaKnown RBP19.11■□□□□ 0.65
CCDC28B-202ENST00000421922 EYA4O95677 639 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 CAVIN2O95810 425 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 RPN1P04843 607 aaKnown RBP19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 SP2Q02086 613 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 ANO6Q4KMQ2 910 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 KCNK18Q7Z418 384 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 GPBP1Q86WP2 473 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 C7orf25Q9BPX7 421 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 EXOC1Q9NV70 894 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 MAN1B1Q9UKM7 699 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 ZSWIM8A7E2V4 1837 aa19.1■□□□□ 0.65
CCDC28B-202ENST00000421922 ARHGEF35A5YM69 484 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 FARP2O94887 1054 aaPredicted RBP19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 SUPT20HL2P0C7V6 817 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 CASP1P29466 404 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 FAM160B1Q5W0V3 765 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 ISM2Q6H9L7 571 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 LRRC15Q8TF66 581 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 BEGAINQ9BUH8 593 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 TRIM9Q9C026 710 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 BHMT2Q9H2M3 363 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 GABBR1Q9UBS5 961 aa19.09■□□□□ 0.65
CCDC28B-202ENST00000421922 ARIH2O95376 493 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 GH1P01241 217 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 HOXD10P28358 340 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 ACVR2BQ13705 512 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 ARHGEF6Q15052 776 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 CELF3Q5SZQ8 465 aaKnown RBP19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 NT5DC1Q5TFE4 455 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 OLFML2BQ68BL8 750 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 SYT2Q8N9I0 419 aaPredicted RBP19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 PIGOQ8TEQ8 1089 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 USP6NLQ92738 828 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 TRIM47Q96LD4 638 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 MTRQ99707 1265 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 GTPBP4Q9BZE4 634 aaKnown RBP19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 DNAJC25Q9H1X3 360 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 PDGFCQ9NRA1 345 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 CASP8AP2Q9UKL3 1982 aa19.08■□□□□ 0.65
CCDC28B-202ENST00000421922 SNAI1O95863 264 aaPredicted RBP19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 IDEP14735 1019 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 SWSAP1Q6NVH7 229 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 DYMQ7RTS9 669 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 C4orf19Q8IY42 314 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 SEPT1Q8WYJ6 367 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 SPATA33Q96N06 139 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 ARHGAP39Q9C0H5 1083 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 AZI2Q9H6S1 392 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 ZNF302Q9NR11 478 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 GJD2Q9UKL4 321 aa19.08■□□□□ 0.64
CCDC28B-202ENST00000421922 A0A087WWV3 80 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 RBM47A0AV96 593 aaKnown RBP19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 MYMKA6NI61 221 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 NKRFO15226 690 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 LYPLA2O95372 231 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 SARSP49591 514 aaKnown RBP19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 SLC12A3P55017 1021 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 PSMC6P62333 389 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 IRF5Q13568 498 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 LAMC2Q13753 1193 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 MFSD14CQ5VZR4 134 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 IQSEC1Q6DN90 963 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 TAPT1Q6NXT6 567 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 CCDC62Q6P9F0 684 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 ABHD15Q6UXT9 468 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 OTUD6AQ7L8S5 288 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 GAS2L3Q86XJ1 694 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 TRMT44Q8IYL2 757 aaKnown RBP19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 SPATA20Q8TB22 786 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 FAM200AQ8TCP9 573 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 DDX12PQ92771 950 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 SAGE1Q9NXZ1 904 aa19.07■□□□□ 0.64
CCDC28B-202ENST00000421922 TBCAO75347 108 aaKnown RBP19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 XRCC5P13010 732 aaKnown RBP19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 YWHABP31946 246 aaKnown RBP19.06■□□□□ 0.64
CCDC28B-202ENST00000421922 ADCYAP1R1P41586 468 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms