RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 TBX3O15119 743 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 ZBED6P86452 979 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 SPA17Q15506 151 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 TRPM4Q8TD43 1214 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.29□□□□□ -0.442e-6■■■■■ 145.4
TCOF1-203ENST00000394269 ZNF541Q9H0D2 1346 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 CTAGE9A4FU28 777 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 LRRC53A6NM62 1247 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 ICAM1P05362 532 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 CIITAP33076 1130 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 MCTP2Q6DN12 878 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 RINT1Q6NUQ1 792 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 MOXD1Q6UVY6 613 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 MIER3Q7Z3K6 550 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 CAPZA3Q96KX2 299 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 TRERF1Q96PN7 1200 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 PSMB7Q99436 277 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 LXNQ9BS40 222 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 NUP58Q9BVL2 599 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 LSM14BQ9BX40 385 aaKnown RBP12.29□□□□□ -0.44
TCOF1-203ENST00000394269 GGA3Q9NZ52 723 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 WRAP73Q9P2S5 460 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-203ENST00000394269 HDAC6Q9UBN7 1215 aa12.29□□□□□ -0.44
TCOF1-203ENST00000394269 PIK3CDO00329 1044 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 FBXO38Q6PIJ6 1188 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 MBOAT7Q96N66 472 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 MAP7D2Q96T17 732 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 RMDN3Q96TC7 470 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 TEKT3Q9BXF9 490 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 GTPBP4Q9BZE4 634 aaKnown RBP12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ZNF408Q9H9D4 720 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 L2HGDHQ9H9P8 463 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 RIPK3Q9Y572 518 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ZBED4O75132 1171 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 KIF20AO95235 890 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 CYLC1P35663 651 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-203ENST00000394269 CASP4P49662 377 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ODR4Q5SWX8 454 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 SYCP3Q8IZU3 236 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 MTMR14Q8NCE2 650 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 HINFPQ9BQA5 517 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 LACRTQ9GZZ8 138 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ARHGEF35A5YM69 484 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 CTNND1O60716 968 aaKnown RBP12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ACTN1P12814 892 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 PTGER2P43116 358 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 MMP14P50281 582 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 CYP2J2P51589 502 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 RAPGEF1Q13905 1077 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 HYIQ5T013 277 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ARHGEF16Q5VV41 709 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 ANKRD7Q92527 254 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 HSD17B14Q9BPX1 270 aa12.28□□□□□ -0.44
TCOF1-203ENST00000394269 REXO2Q9Y3B8 237 aaKnown RBP12.28□□□□□ -0.44
TCOF1-203ENST00000394269 SRGAP2O75044 1071 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 PSMD10O75832 226 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 TUBB4AP04350 444 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 EIF4A3P38919 411 aaKnown RBP12.27□□□□□ -0.44
TCOF1-203ENST00000394269 EHHADHQ08426 723 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 BAATQ14032 418 aaPredicted RBP12.27□□□□□ -0.44
TCOF1-203ENST00000394269 KNOP1Q1ED39 458 aaKnown RBP12.27□□□□□ -0.44
TCOF1-203ENST00000394269 JAKMIP2Q96AA8 810 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 DNAJC7Q99615 494 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 SPON1Q9HCB6 807 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 PRDM10Q9NQV6 1147 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 ZNF536O15090 1300 aa12.27□□□□□ -0.44
TCOF1-203ENST00000394269 WDR46O15213 610 aaKnown RBP12.27□□□□□ -0.45
TCOF1-203ENST00000394269 EYA4O95677 639 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 CYP3A4P08684 503 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 KCNH2Q12809 1159 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 MTMR1Q13613 665 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 COG2Q14746 738 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 RNF207Q6ZRF8 634 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 MTERF4Q7Z6M4 381 aaKnown RBP12.27□□□□□ -0.45
TCOF1-203ENST00000394269 FAM178BQ8IXR5 827 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 ZBED3Q96IU2 234 aaPredicted RBP12.27□□□□□ -0.45
TCOF1-203ENST00000394269 MXRA8Q9BRK3 442 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 ARMCX3Q9UH62 379 aaPredicted RBP12.27□□□□□ -0.45
TCOF1-203ENST00000394269 PCDHA2Q9Y5H9 948 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 RCCD1A6NED2 376 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 USO1O60763 962 aaKnown RBP12.27□□□□□ -0.45
TCOF1-203ENST00000394269 SEMA3FQ13275 785 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 SNRNP48Q6IEG0 339 aaKnown RBP12.27□□□□□ -0.45
TCOF1-203ENST00000394269 ERGIC2Q96RQ1 377 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 VPS33BQ9H267 617 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 PGAP2Q9UHJ9 254 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 FOCADQ5VW36 1801 aa12.27□□□□□ -0.45
TCOF1-203ENST00000394269 RHOXF2BP0C7M4 288 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 KRT83P78385 493 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 MAP3K9P80192 1104 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 DNAAF5Q86Y56 855 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 SYTL5Q8TDW5 730 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-203ENST00000394269 RHOXF2Q9BQY4 288 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 PCIF1Q9H4Z3 704 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 JADE2Q9NQC1 790 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 CGNQ9P2M7 1197 aaKnown RBP12.26□□□□□ -0.45
TCOF1-203ENST00000394269 TNS1Q9HBL0 1735 aaKnown RBP12.26□□□□□ -0.45
TCOF1-203ENST00000394269 ATP9AO75110 1047 aa12.26□□□□□ -0.45
TCOF1-203ENST00000394269 DDNO94850 711 aaPredicted RBP12.26□□□□□ -0.45
TCOF1-203ENST00000394269 ARHGAP25P42331 645 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms