RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 FAM170AA1A519 330 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 HSF2BPO75031 334 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 RAPGEF1Q13905 1077 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 ABCB5Q2M3G0 1257 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 ZCWPW2Q504Y3 356 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 EMBQ6PCB8 327 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 MICALL1Q8N3F8 863 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 HAS1Q92839 578 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 VEZTQ9HBM0 779 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 ADAMTS1Q9UHI8 967 aa17.88■□□□□ 0.45
NKX3-1-201ENST00000380871 DACT2Q5SW24 774 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 GPATCH4Q5T3I0 446 aaKnown RBP17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 POTEB3A0JP26 581 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 ZNF233A6NK53 670 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 POTECB2RU33 542 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 GOLGA8KD6RF30 607 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 EN1Q05925 392 aaPredicted RBP17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 CFAP221Q4G0U5 840 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 TMEM119Q4V9L6 283 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 SFMBT2Q5VUG0 894 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 POTEBQ6S5H4 581 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 PPM1EQ8WY54 764 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 CSRNP1Q96S65 589 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 FAM169AQ9Y6X4 670 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 ZEB2O60315 1214 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 SLC9C1Q4G0N8 1177 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 TSG101Q99816 390 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 PANK4Q9NVE7 773 aa17.87■□□□□ 0.45
NKX3-1-201ENST00000380871 SNHG28P0DPA3 235 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 ACTN1P12814 892 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 CYP4A11Q02928 519 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 NNTQ13423 1086 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 FAM26FQ5R3K3 315 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 MIGA2Q7L4E1 593 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 TRMT1LQ7Z2T5 733 aaKnown RBP17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 TADA2BQ86TJ2 420 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 KAT2BQ92831 832 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 CAVIN3Q969G5 261 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 IQCDQ96DY2 449 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 ZDHHC15Q96MV8 337 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 SUGT1Q9Y2Z0 365 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 UBR3Q6ZT12 1888 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 CDK5RAP2Q96SN8 1893 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 SSU72P8A0A1W2PR75 194 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 ESYT2A0FGR8 921 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 KIAA0753Q2KHM9 967 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 KLHL7Q8IXQ5 586 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 CASKIN2Q8WXE0 1202 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 CEP72Q9P209 647 aa17.86■□□□□ 0.45
NKX3-1-201ENST00000380871 FGFR1OPO95684 399 aaKnown RBP17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 FKBP3Q00688 224 aaKnown RBP17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 PIK3R5Q8WYR1 880 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 ANO3Q9BYT9 981 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 EBAG9O00559 213 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 OPA1O60313 960 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 ZNF76P36508 570 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 ECE1P42892 770 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 NT5C2P49902 561 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 GUCY1A3Q02108 690 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 CCDC174Q6PII3 467 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 EFCAB13Q8IY85 973 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 CCDC17Q96LX7 622 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 RBAK-RBAKDNI3L0D1 243 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 NDUFB10O96000 172 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 SERPING1P05155 500 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 SMARCA1P28370 1054 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 RRP1BQ14684 758 aaKnown RBP17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 STRIP1Q5VSL9 837 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 RNPC3Q96LT9 517 aaKnown RBP17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 GDF3Q9NR23 364 aa17.85■□□□□ 0.45
NKX3-1-201ENST00000380871 ABCB11O95342 1321 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 NAB2Q15742 525 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 SIAH1Q8IUQ4 282 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 CYP2W1Q8TAV3 490 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 GRID2IPA4D2P6 1211 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 POTEFA5A3E0 1075 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 POTEIP0CG38 1075 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 HERC4Q5GLZ8 1057 aaPredicted RBP17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 RBM26Q5T8P6 1007 aaKnown RBP17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 POTEGQ6S5H5 508 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 POTEEQ6S8J3 1075 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 CDAN1Q8IWY9 1227 aa17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 INPP4AQ96PE3 977 aaPredicted RBP17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.84■□□□□ 0.45
NKX3-1-201ENST00000380871 RAD51CO43502 376 aa17.83■□□□□ 0.45
NKX3-1-201ENST00000380871 ALS2CLQ60I27 953 aa17.83■□□□□ 0.45
NKX3-1-201ENST00000380871 IFT20Q8IY31 132 aa17.83■□□□□ 0.45
NKX3-1-201ENST00000380871 CHMP2AO43633 222 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 CASP5P51878 434 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 PABPC4Q13310 644 aaKnown RBP eCLIP17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 PDIA5Q14554 519 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 SLC18A3Q16572 532 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 CFAP58Q5T655 872 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 GPBP1Q86WP2 473 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 IQCKQ8N0W5 287 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 RNF10Q8N5U6 811 aaKnown RBP17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 ACER1Q8TDN7 264 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 SCFD1Q8WVM8 642 aa17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 P2RX7Q99572 595 aaKnown RBP17.83■□□□□ 0.44
NKX3-1-201ENST00000380871 PPP1R1BQ9UD71 204 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms