RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 DNM2P50570 870 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 SH3TC2Q8TF17 1288 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 GATA6Q92908 595 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 BRD8Q9H0E9 1235 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 DBF4Q9UBU7 674 aaPredicted RBP17.13■□□□□ 0.33
RTN3-205ENST00000356000 SALL4Q9UJQ4 1053 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 TMEM59LQ9UK28 342 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 BARX2Q9UMQ3 279 aaPredicted RBP17.13■□□□□ 0.33
RTN3-205ENST00000356000 SBF2Q86WG5 1849 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 MROH7Q68CQ1 1323 aa17.13■□□□□ 0.33
RTN3-205ENST00000356000 MYH2Q9UKX2 1941 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 CEP104O60308 925 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 SRGNP10124 158 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 TRIM21P19474 475 aaKnown RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 KCNA3P22001 575 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 STKLD1Q8NE28 680 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 SUCLG2Q96I99 432 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 INPP4AQ96PE3 977 aaPredicted RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 NUDCD1Q96RS6 583 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 PRMT1Q99873 361 aaKnown RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 CETN3O15182 167 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 NVLO15381 856 aaKnown RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 PRPF3O43395 683 aaKnown RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 TJP3O95049 919 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 GJB6O95452 261 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 FLT3P36888 993 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 ANTXR2P58335 489 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 RILPL1Q5EBL4 403 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 RASIP1Q5U651 963 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 PI16Q6UXB8 463 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 TMC3Q7Z5M5 1100 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 FITM2Q8N6M3 262 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 ARL10Q8N8L6 244 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 DDX27Q96GQ7 796 aaKnown RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 SELENOSQ9BQE4 189 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 MTA3Q9BTC8 594 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 PPP1R12CQ9BZL4 782 aa17.12■□□□□ 0.33
RTN3-205ENST00000356000 INTS9Q9NV88 658 aaKnown RBP17.12■□□□□ 0.33
RTN3-205ENST00000356000 ECM29Q5VYK3 1845 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 HNRNPRO43390 633 aaKnown RBP17.11■□□□□ 0.33
RTN3-205ENST00000356000 GM2AP17900 193 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 KBTBD12Q3ZCT8 623 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 CFAP61Q8NHU2 1237 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 FAM114A2Q9NRY5 505 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 TMOD4Q9NZQ9 345 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 CD2APQ9Y5K6 639 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 UNC5CO95185 931 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 PLEKP08567 350 aaPredicted RBP17.11■□□□□ 0.33
RTN3-205ENST00000356000 EEF1GP26641 437 aaKnown RBP17.11■□□□□ 0.33
RTN3-205ENST00000356000 PLOD1Q02809 727 aaPredicted RBP17.11■□□□□ 0.33
RTN3-205ENST00000356000 RASSF7Q02833 373 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 SULT2A1Q06520 285 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 RCN2Q14257 317 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 CCDC92Q53HC0 331 aaPredicted RBP17.11■□□□□ 0.33
RTN3-205ENST00000356000 HOOK3Q86VS8 718 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 TBC1D16Q8TBP0 767 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 FERMT2Q96AC1 680 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 HIC2Q96JB3 615 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 NOX5Q96PH1 765 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 NMRK1Q9NWW6 199 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 CHPF2Q9P2E5 772 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 HSFX1Q9UBD0 423 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 ABCF2Q9UG63 623 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 CASZ1Q86V15 1759 aa17.11■□□□□ 0.33
RTN3-205ENST00000356000 SKIP12755 728 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 DDX42Q86XP3 938 aaKnown RBP eCLIP17.1■□□□□ 0.33
RTN3-205ENST00000356000 MTMR8Q96EF0 704 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 DDX23Q9BUQ8 820 aaKnown RBP17.1■□□□□ 0.33
RTN3-205ENST00000356000 PCDHB6Q9Y5E3 794 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 HNRNPH3P31942 346 aaKnown RBP17.1■□□□□ 0.33
RTN3-205ENST00000356000 KIF11P52732 1056 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 CCDC152Q4G0S7 254 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 SEPT14Q6ZU15 432 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 NCCRP1Q6ZVX7 275 aaPredicted RBP17.1■□□□□ 0.33
RTN3-205ENST00000356000 KLHL7Q8IXQ5 586 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 USP38Q8NB14 1042 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 WDR66Q8TBY9 1149 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 SPIRE2Q8WWL2 714 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 LPIN2Q92539 896 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 PHKBQ93100 1093 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 CCDC28BQ9BUN5 200 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 ETNK1Q9HBU6 452 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 ARL2BPQ9Y2Y0 163 aa17.1■□□□□ 0.33
RTN3-205ENST00000356000 A0A1W2PQJ5 194 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 ATP9AO75110 1047 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 NFAT5O94916 1531 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 ZFXP17010 805 aaPredicted RBP17.09■□□□□ 0.33
RTN3-205ENST00000356000 SPDYCQ5MJ68 293 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 WDR19Q8NEZ3 1342 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 ZNF653Q96CK0 615 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 PGM2Q96G03 612 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 OXCT2Q9BYC2 517 aaPredicted RBP17.09■□□□□ 0.33
RTN3-205ENST00000356000 PCDH11XQ9BZA7 1347 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 SH3GLB1Q9Y371 365 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 STK36Q9NRP7 1315 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 GNAT3A8MTJ3 354 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 BTBD18B2RXH4 712 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 CYP1A1P04798 512 aaPredicted RBP17.09■□□□□ 0.33
RTN3-205ENST00000356000 SPATA31D3P0C874 917 aa17.09■□□□□ 0.33
RTN3-205ENST00000356000 IDO1P14902 403 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms