RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 NBPF20Q3BBV1 942 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 RDM1Q8NG50 284 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 RNPEPQ9H4A4 650 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 SMARCAD1Q9H4L7 1026 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 CIZ1Q9ULV3 898 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-203ENST00000354098 DNAH12Q6ZR08 3092 aa24.93■■□□□ 1.58
SHMT1-203ENST00000354098 ITGA7Q13683 1181 aa24.92■■□□□ 1.58
SHMT1-203ENST00000354098 SLC39A14Q15043 492 aa24.92■■□□□ 1.58
SHMT1-203ENST00000354098 TMEM266Q2M3C6 531 aa24.92■■□□□ 1.58
SHMT1-203ENST00000354098 ARL6IP4Q66PJ3 421 aaKnown RBP24.92■■□□□ 1.58
SHMT1-203ENST00000354098 SLC39A5Q6ZMH5 540 aa24.92■■□□□ 1.58
SHMT1-203ENST00000354098 BANK1Q8NDB2 785 aa24.92■■□□□ 1.58
SHMT1-203ENST00000354098 VWA3AA6NCI4 1184 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 ATP4AP20648 1035 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 GRIN1Q05586 938 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 EPHA7Q15375 998 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 PLPPR4Q7Z2D5 763 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 LINC00301Q8NCQ3 95 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 AFAP1L1Q8TED9 768 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 ERAP1Q9NZ08 941 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 RGL1Q9NZL6 768 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 ZNF215Q9UL58 517 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-203ENST00000354098 MAFBQ9Y5Q3 323 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-203ENST00000354098 FAM160B1Q5W0V3 765 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 PDXDC2PQ6P474 469 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 TRMT1LQ7Z2T5 733 aaKnown RBP24.91■■□□□ 1.58
SHMT1-203ENST00000354098 IGSF22Q8N9C0 903 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 KATNAL1Q9BW62 490 aa24.91■■□□□ 1.58
SHMT1-203ENST00000354098 A0A0U1RQG5 324 aaPredicted RBP24.9■■□□□ 1.58
SHMT1-203ENST00000354098 PP2D1A8MPX8 630 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 ZNF862O60290 1169 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 PDIA5Q14554 519 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 STK38Q15208 465 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 DYDC2Q96IM9 177 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 EIF2AK1Q9BQI3 630 aaKnown RBP24.9■■□□□ 1.58
SHMT1-203ENST00000354098 CHMP5Q9NZZ3 219 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 LRWD1Q9UFC0 647 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 ATP6V1DQ9Y5K8 247 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 IGSF9BQ9UPX0 1349 aa24.9■■□□□ 1.58
SHMT1-203ENST00000354098 SCN10AQ9Y5Y9 1956 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 CDC25AP30304 524 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 CYP4A11Q02928 519 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 LRRC26Q2I0M4 334 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 ATL3Q6DD88 541 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 SLC43A3Q8NBI5 491 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 HSD17B14Q9BPX1 270 aa24.89■■□□□ 1.58
SHMT1-203ENST00000354098 WRAP73Q9P2S5 460 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-203ENST00000354098 FBXO2Q9UK22 296 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-203ENST00000354098 ARVCFO00192 962 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 SLITRK3O94933 977 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 CTTNQ14247 550 aaKnown RBP24.88■■□□□ 1.57
SHMT1-203ENST00000354098 PLCB4Q15147 1175 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 HDAC6Q9UBN7 1215 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 CFAP45Q9UL16 551 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 SPTLC2O15270 562 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 YEATS4O95619 227 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 P4HBP07237 508 aaKnown RBP24.88■■□□□ 1.57
SHMT1-203ENST00000354098 NCLP19338 710 aaKnown RBP24.88■■□□□ 1.57
SHMT1-203ENST00000354098 CDK7P50613 346 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 FAM47CQ5HY64 1035 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 CLIC6Q96NY7 704 aa24.88■■□□□ 1.57
SHMT1-203ENST00000354098 QARSP47897 775 aaKnown RBP24.87■■□□□ 1.57
SHMT1-203ENST00000354098 PSMC5P62195 406 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 HIC1Q14526 733 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 SNX17Q15036 470 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 NFRKBQ6P4R8 1299 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 CKAP2LQ8IYA6 745 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 C7orf31Q8N865 590 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 LXNQ9BS40 222 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 RAB34Q9BZG1 259 aa24.87■■□□□ 1.57
SHMT1-203ENST00000354098 SRPRBQ9Y5M8 271 aaKnown RBP24.87■■□□□ 1.57
SHMT1-203ENST00000354098 POTEB3A0JP26 581 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 MED24O75448 989 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 SPATA31C1P0DKV0 1188 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 SMIM10L2AP0DMW4 78 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 SMIM10L2BP0DMW5 78 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 SLC26A2P50443 739 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 KRT85P78386 507 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 PRKCEQ02156 737 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 TRIM60Q495X7 471 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 POTEBQ6S5H4 581 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 CATSPER3Q86XQ3 398 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 TPH2Q8IWU9 490 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 ATP6V0A1Q93050 837 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 TRPC6Q9Y210 931 aa24.86■■□□□ 1.57
SHMT1-203ENST00000354098 MORC2Q9Y6X9 1032 aaPredicted RBP24.86■■□□□ 1.57
SHMT1-203ENST00000354098 STBD1O95210 358 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 C1orf53Q5VUE5 145 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 ATP8B4Q8TF62 1192 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 CSRNP2Q9H175 543 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 SETD4Q9NVD3 440 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 RCOR1Q9UKL0 485 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 TMEM150BA6NC51 233 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 RTP1P59025 263 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 ZNF200P98182 395 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-203ENST00000354098 SPECC1Q5M775 1068 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 GDF6Q6KF10 455 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-203ENST00000354098 MMTAG2Q9BU76 263 aaKnown RBP24.85■■□□□ 1.57
SHMT1-203ENST00000354098 GTF2IRD1Q9UHL9 959 aa24.85■■□□□ 1.57
SHMT1-203ENST00000354098 ATP11BQ9Y2G3 1177 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms