RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SPEM1Q8N4L4 309 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 BANK1Q8NDB2 785 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 SERINC2Q96SA4 455 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 RSPO3Q9BXY4 272 aaPredicted RBP1.96□□□□□ -2.09
LINC00643-201ENST00000334389 ERVMER34-1Q9H9K5 563 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 UBN1Q9NPG3 1134 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP1.96□□□□□ -2.09
LINC00643-201ENST00000334389 NCKIPSDQ9NZQ3 722 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 TMOD4Q9NZQ9 345 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 TMEM63CQ9P1W3 806 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 ANKMY1Q9P2S6 941 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 PI4KBQ9UBF8 816 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 TPCN1Q9ULQ1 816 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 NUDCQ9Y266 331 aa1.96□□□□□ -2.09
LINC00643-201ENST00000334389 GOLGA6L3A6NEY3 463 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 SPDYE16A6NNV3 312 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 C2CD4DB7Z1M9 353 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 COBLO75128 1261 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ATG13O75143 517 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 DGKIO75912 1065 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CFBP00751 764 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CCND3P30281 292 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 MAN1A1P33908 653 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ITGAEP38570 1179 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 RPIAP49247 311 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 SARSP49591 514 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 KRT83P78385 493 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 PURAQ00577 322 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TLE2Q04725 743 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 RING1Q06587 406 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 SMC1AQ14683 1233 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 PAPD7Q5XG87 772 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 KIAA0895LQ68EN5 471 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TAF2Q6P1X5 1199 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 DHX32Q7L7V1 743 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 SDR16C5Q8N3Y7 309 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 OXR1Q8N573 874 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TDRD5Q8NAT2 981 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 PPTC7Q8NI37 304 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TMC1Q8TDI8 760 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 AFG1LQ8WV93 481 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CFAP53Q96M91 514 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 FAM124BQ9H5Z6 455 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 KIF9Q9HAQ2 790 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CD320Q9NPF0 282 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 FEM1BQ9UK73 627 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TRIP12Q14669 1992 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 HMX2A2RU54 273 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 PPP1R3GB7ZBB8 358 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ARNTLO00327 626 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 IRS4O14654 1257 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 KRT37O76014 449 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 GP1BAP07359 652 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CD1EP15812 388 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 PDE4AP27815 886 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 IGHMBP2P38935 993 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ZNF200P98182 395 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TNFAIP2Q03169 654 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 EML3Q32P44 896 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 INAVAQ3KP66 663 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 FBXO43Q4G163 708 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 EFHC1Q5JVL4 640 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 LMBRD2Q68DH5 695 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TAPT1Q6NXT6 567 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 MRPL10Q7Z7H8 261 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ZFP91Q96JP5 570 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CLMNQ96JQ2 1002 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 RUSC1Q9BVN2 902 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 NFKBIZQ9BYH8 718 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 ELP3Q9H9T3 547 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 WDR6Q9NNW5 1121 aaKnown RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 XPNPEP3Q9NQH7 507 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CYP26B1Q9NR63 512 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TLR9Q9NR96 1032 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 TMEM39AQ9NV64 488 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 SEPT9Q9UHD8 586 aaPredicted RBP1.96□□□□□ -2.1
LINC00643-201ENST00000334389 GTF2IRD1Q9UHL9 959 aa1.96□□□□□ -2.1
LINC00643-201ENST00000334389 CKAP5Q14008 2032 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 DDX11L8A8MPP1 907 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 USP17L10C9JJH3 530 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 TMX2-CTNND1H3BSU7 103 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 CAPN5O15484 640 aaPredicted RBP1.95□□□□□ -2.1
LINC00643-201ENST00000334389 UQCRFS1P1P0C7P4 283 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 C6P13671 934 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 SSTR3P32745 418 aaPredicted RBP1.95□□□□□ -2.1
LINC00643-201ENST00000334389 PEX19P40855 299 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 SQSTM1Q13501 440 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 ARID5BQ14865 1188 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 PUM3Q15397 648 aaKnown RBP1.95□□□□□ -2.1
LINC00643-201ENST00000334389 LONRF1Q17RB8 773 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 MFSD14BQ5SR56 506 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 TTLL5Q6EMB2 1281 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 TMEM179Q6ZVK1 233 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 CACNA2D4Q7Z3S7 1137 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 EXOC8Q8IYI6 725 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 LPIN2Q92539 896 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 MRPS27Q92552 414 aaKnown RBP1.95□□□□□ -2.1
LINC00643-201ENST00000334389 ARHGAP45Q92619 1136 aa1.95□□□□□ -2.1
LINC00643-201ENST00000334389 DDX11Q96FC9 970 aa1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms