RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ZNF467Q7Z7K2 595 aaPredicted RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 GIMAP8Q8ND71 665 aaPredicted RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PIGOQ8TEQ8 1089 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 SOCS4Q8WXH5 440 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 TRIM44Q96DX7 344 aaPredicted RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 CCDC43Q96MW1 224 aaKnown RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 MTRQ99707 1265 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 SENP7Q9BQF6 1050 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 ARHGAP39Q9C0H5 1083 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PDGFCQ9NRA1 345 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 KBTBD4Q9NVX7 518 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 ANO10Q9NW15 660 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 RNF186Q9NXI6 227 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PCDHA10Q9Y5I2 948 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 NFASCO94856 1347 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 KRT18P05783 430 aaKnown RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PLA2G4BP0C869 781 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 ACTR2P61160 394 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PSMC6P62333 389 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 LACTBP83111 547 aaPredicted RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 ANO6Q4KMQ2 910 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 HS1BP3Q53T59 392 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 B3GNT9Q6UX72 402 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 NEK9Q8TD19 979 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 MORC4Q8TE76 937 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 SCFD2Q8WU76 684 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PRDM10Q9NQV6 1147 aa11.19□□□□□ -0.62
HMGB3-201ENST00000325307 BMP2KQ9NSY1 1161 aaPredicted RBP11.19□□□□□ -0.62
HMGB3-201ENST00000325307 PSAPP07602 524 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 SP3Q02447 781 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 DPYDQ12882 1025 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 UVSSAQ2YD98 709 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 UTP14CQ5TAP6 766 aaKnown RBP11.18□□□□□ -0.62
HMGB3-201ENST00000325307 DYMQ7RTS9 669 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 LRRC27Q9C0I9 530 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 DNAJC25Q9H1X3 360 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 ZSWIM4Q9H7M6 989 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 VTA1Q9NP79 307 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 NOP56O00567 594 aaKnown RBP11.18□□□□□ -0.62
HMGB3-201ENST00000325307 ARIH2O95376 493 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 IDEP14735 1019 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 QARSP47897 775 aaKnown RBP11.18□□□□□ -0.62
HMGB3-201ENST00000325307 MIS18BP1Q6P0N0 1132 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 GPBP1Q86WP2 473 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 ANP32BQ92688 251 aaKnown RBP11.18□□□□□ -0.62
HMGB3-201ENST00000325307 CCDC47Q96A33 483 aaKnown RBP11.18□□□□□ -0.62
HMGB3-201ENST00000325307 BHMT2Q9H2M3 363 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 TUBE1Q9UJT0 475 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 RAD51AP2Q09MP3 1159 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 SWSAP1Q6NVH7 229 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 TRIM47Q96LD4 638 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 NACC1Q96RE7 527 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 APBA2Q99767 749 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 GABBR1Q9UBS5 961 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 DDX41Q9UJV9 622 aaKnown RBP11.18□□□□□ -0.62
HMGB3-201ENST00000325307 MAN1B1Q9UKM7 699 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 KIAA1217Q5T5P2 1943 aa11.18□□□□□ -0.62
HMGB3-201ENST00000325307 SNAI1O95863 264 aaPredicted RBP11.17□□□□□ -0.62
HMGB3-201ENST00000325307 RPN1P04843 607 aaKnown RBP11.17□□□□□ -0.62
HMGB3-201ENST00000325307 CCL14Q16627 93 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 MAMDC4Q6UXC1 1216 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 RDM1Q8NG50 284 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 GSDMAQ96QA5 445 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 TRIM9Q9C026 710 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 TELO2Q9Y4R8 837 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 MCM3APO60318 1980 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 MYMKA6NI61 221 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ZBTB39O15060 712 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 MYL1P05976 194 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 CTGFP29279 349 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 NLRP12P59046 1061 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 PSMC5P62195 406 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 DPCR1Q3MIW9 517 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 METTL7BQ6UX53 244 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 COPS5Q92905 334 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ATP6V0A1Q93050 837 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ABHD16BQ9H3Z7 469 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ZHX3Q9H4I2 956 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 WRAP73Q9P2S5 460 aaPredicted RBP11.17□□□□□ -0.62
HMGB3-201ENST00000325307 SYNGAP1Q96PV0 1343 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 DOCK3Q8IZD9 2030 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 FARP2O94887 1054 aaPredicted RBP11.17□□□□□ -0.62
HMGB3-201ENST00000325307 EYA4O95677 639 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 CYP2C19P33261 490 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ADCYAP1R1P41586 468 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ACVR2BQ13705 512 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 UGCGQ16739 394 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ZSCAN30Q86W11 494 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 DDX12PQ92771 950 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 SPATA33Q96N06 139 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 EXOC1Q9NV70 894 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 RMND1Q9NWS8 449 aa11.17□□□□□ -0.62
HMGB3-201ENST00000325307 ARHGEF35A5YM69 484 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 PRAMEF19Q5SWL8 479 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 CELF3Q5SZQ8 465 aaKnown RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 GJC2Q5T442 439 aaPredicted RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 C7orf25Q9BPX7 421 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 NAT10Q9H0A0 1025 aaKnown RBP11.16□□□□□ -0.62
HMGB3-201ENST00000325307 GJD2Q9UKL4 321 aa11.16□□□□□ -0.62
HMGB3-201ENST00000325307 ZNF500O60304 480 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms