RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SFSWAPQ12872 951 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 PDIK1LQ8N165 341 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CCDC197Q8NCU1 140 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 STN1Q9H668 368 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 ABLIM1O14639 778 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 STK3Q13188 491 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PRPF4BQ13523 1007 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 TMTC3Q6ZXV5 915 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 AADATQ8N5Z0 425 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 RMDN2Q96LZ7 410 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TEKT3Q9BXF9 490 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 SERPINA10Q9UK55 444 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PCDHA4Q9UN74 947 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 ZC3H11AO75152 810 aaKnown RBP eCLIP4.33□□□□□ -1.72
USH2A-201ENST00000307340 MMP1P03956 469 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CDH2P19022 906 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 TNFAIP3P21580 790 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CYP7A1P22680 504 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 EXOC3L4Q17RC7 722 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 STAG1Q8WVM7 1258 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 KLC2Q9H0B6 622 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 PARVGQ9HBI0 331 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CEP72Q9P209 647 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 CD163L1Q9NR16 1453 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TMEM247A6NEH6 219 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 FOXD4L6Q3SYB3 417 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 FOXD4L3Q6VB84 417 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 ENAHQ8N8S7 591 aaPredicted RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 PDLIM2Q96JY6 352 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TUBGCP2Q9BSJ2 902 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TUFT1Q9NNX1 390 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 NOP56O00567 594 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 KMT5BQ4FZB7 885 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 GUF1Q8N442 669 aaKnown RBP4.33□□□□□ -1.72
USH2A-201ENST00000307340 UBR1Q8IWV7 1749 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 KCNJ18B7U540 433 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 AP2B1P63010 937 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 KCNJ12Q14500 433 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TTC30AQ86WT1 665 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 TTC30BQ8N4P2 665 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 MAGEB6Q8N7X4 407 aa4.33□□□□□ -1.72
USH2A-201ENST00000307340 ESRRBO95718 433 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 IBSPP21815 317 aaPredicted RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 CHRNA3P32297 505 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 MAP3K19Q56UN5 1328 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 HGSO14964 777 aaPredicted RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 STRNO43815 780 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 DHX9Q08211 1270 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 SNX1Q13596 522 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 METTL3Q86U44 580 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 MEIS3Q99687 375 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 RIOK1Q9BRS2 568 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 SCN11AQ9UI33 1791 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 KIF13AQ9H1H9 1805 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 SRGAP2CP0DJJ0 459 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 FAM47CQ5HY64 1035 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 PAWRQ96IZ0 340 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 CDK5RAP1Q96SZ6 601 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 BRD8Q9H0E9 1235 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 BICC1Q9H694 974 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 ARHGAP23Q9P227 1491 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 PCK1P35558 622 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 PLCB3Q01970 1234 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 FGD4Q96M96 766 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 NDEL1Q9GZM8 345 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 TMCO1Q9UM00 188 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 GUCA1BQ9UMX6 200 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 STK38LQ9Y2H1 464 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 CFAP69A5D8W1 941 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 FAM187AA6NFU0 413 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 KRT8P05787 483 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 ANXA11P50995 505 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 PDE4DQ08499 809 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 C1orf131Q8NDD1 294 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 DDX54Q8TDD1 881 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 NCLNQ969V3 563 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 KLHL41O60662 606 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 MCM7P33993 719 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 EFNA5P52803 228 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 AP1ARQ63HQ0 302 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 ASB2Q96Q27 587 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 LMBRD1Q9NUN5 540 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 INHBAP08476 426 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 PYGMP11217 842 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 ZMYM1Q5SVZ6 1142 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 SNIP1Q8TAD8 396 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 VCPIP1Q96JH7 1222 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 HHATLQ9HCP6 504 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 PI4KBQ9UBF8 816 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 ESYT2A0FGR8 921 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 RASSF10A6NK89 507 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 KPNA7A9QM74 516 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 H0Y3Z8 333 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 TRAPPC3LQ5T215 181 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 TOGARAM2Q6ZUX3 1019 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 TRMT10CQ7L0Y3 403 aaKnown RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 UBLCP1Q8WVY7 318 aaPredicted RBP4.32□□□□□ -1.72
USH2A-201ENST00000307340 ZNF518BQ9C0D4 1074 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 DNAJC12Q9UKB3 198 aa4.32□□□□□ -1.72
USH2A-201ENST00000307340 ADGRA2Q96PE1 1338 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms