RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 TRERF1Q96PN7 1200 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 LXNQ9BS40 222 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 LSM14BQ9BX40 385 aaKnown RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 RNF216Q9NWF9 866 aaPredicted RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 LRRC53A6NM62 1247 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 CETN3O15182 167 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 AKR1B10O60218 316 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 POLR2FP61218 127 aaKnown RBP12.68□□□□□ -0.38
CUX1-202ENST00000292538 RINT1Q6NUQ1 792 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.68□□□□□ -0.384e-6■■■■□ 23.2
CUX1-202ENST00000292538 TEKT3Q9BXF9 490 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.68□□□□□ -0.388e-7■■■■■ 154.8
CUX1-202ENST00000292538 PGAP2Q9UHJ9 254 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 RIPK3Q9Y572 518 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 ZNF536O15090 1300 aa12.68□□□□□ -0.38
CUX1-202ENST00000292538 CTAGE9A4FU28 777 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 CTNND1O60716 968 aaKnown RBP12.67□□□□□ -0.38
CUX1-202ENST00000292538 PSMD10O75832 226 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ACTN1P12814 892 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 PTGER2P43116 358 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 MMP14P50281 582 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 DNA2P51530 1060 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ZBED6P86452 979 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 EHHADHQ08426 723 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 FBXO38Q6PIJ6 1188 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 MIER3Q7Z3K6 550 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ZBED3Q96IU2 234 aaPredicted RBP12.67□□□□□ -0.38
CUX1-202ENST00000292538 PKNOX2Q96KN3 472 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 RMDN3Q96TC7 470 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 L2HGDHQ9H9P8 463 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 HDAC6Q9UBN7 1215 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 REXO2Q9Y3B8 237 aaKnown RBP12.67□□□□□ -0.38
CUX1-202ENST00000292538 ZBED4O75132 1171 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 CASP4P49662 377 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 SPA17Q15506 151 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ODR4Q5SWX8 454 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ARHGEF16Q5VV41 709 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ANKRD7Q92527 254 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 CAPZA3Q96KX2 299 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 PSMB7Q99436 277 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 DNAJC7Q99615 494 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 NUP58Q9BVL2 599 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 GTPBP4Q9BZE4 634 aaKnown RBP12.67□□□□□ -0.38
CUX1-202ENST00000292538 VPS33BQ9H267 617 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 PCDHA2Q9Y5H9 948 aa12.67□□□□□ -0.38
CUX1-202ENST00000292538 ARHGEF35A5YM69 484 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 WDR46O15213 610 aaKnown RBP12.66□□□□□ -0.38
CUX1-202ENST00000292538 SRGAP2O75044 1071 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 CYP3A4P08684 503 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 CYLC1P35663 651 aaPredicted RBP12.66□□□□□ -0.38
CUX1-202ENST00000292538 CYP2J2P51589 502 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 MTMR1Q13613 665 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 COG2Q14746 738 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 KNOP1Q1ED39 458 aaKnown RBP12.66□□□□□ -0.38
CUX1-202ENST00000292538 HSD17B14Q9BPX1 270 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 MXRA8Q9BRK3 442 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 LACRTQ9GZZ8 138 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 KIF20AO95235 890 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 EYA4O95677 639 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 RAPGEF1Q13905 1077 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 BAATQ14032 418 aaPredicted RBP12.66□□□□□ -0.38
CUX1-202ENST00000292538 SYCP3Q8IZU3 236 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 JAKMIP2Q96AA8 810 aa12.66□□□□□ -0.38
CUX1-202ENST00000292538 RCCD1A6NED2 376 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 USO1O60763 962 aaKnown RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 EIF4A3P38919 411 aaKnown RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 ZNF280AP59817 542 aaPredicted RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 HERVK_113P62684 666 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 KCNH2Q12809 1159 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 SNRNP48Q6IEG0 339 aaKnown RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 RNF207Q6ZRF8 634 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 FAM178BQ8IXR5 827 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 SYTL5Q8TDW5 730 aaPredicted RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 CLEC4DQ8WXI8 215 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 MAP7D2Q96T17 732 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 HINFPQ9BQA5 517 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 KIAA1683Q9H0B3 1180 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 KCTD10Q9H3F6 313 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 DDNO94850 711 aaPredicted RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 TUBB4AP04350 444 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 ARHGAP25P42331 645 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 SEMA3FQ13275 785 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 DNAAF5Q86Y56 855 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 ERGIC2Q96RQ1 377 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 PRDM10Q9NQV6 1147 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 ARMCX3Q9UH62 379 aaPredicted RBP12.65□□□□□ -0.38
CUX1-202ENST00000292538 SIK3Q9Y2K2 1263 aa12.65□□□□□ -0.38
CUX1-202ENST00000292538 ATP9AO75110 1047 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 RPS12P25398 132 aaKnown RBP12.65□□□□□ -0.39
CUX1-202ENST00000292538 MAP3K9P80192 1104 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 GFPT1Q06210 699 aaPredicted RBP12.65□□□□□ -0.39
CUX1-202ENST00000292538 KCNMA1Q12791 1236 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 DCAF15Q66K64 600 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 MCF2L2Q86YR7 1114 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 ZNF280CQ8ND82 737 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 LPAR1Q92633 364 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 SLC5A5Q92911 643 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 POLR3CQ9BUI4 534 aaPredicted RBP12.65□□□□□ -0.39
CUX1-202ENST00000292538 TTYH3Q9C0H2 523 aa12.65□□□□□ -0.39
CUX1-202ENST00000292538 PCIF1Q9H4Z3 704 aa12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms