RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 USP42Q9H9J4 1324 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 GOLGA8SH3BPF8 625 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 PODXLO00592 558 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 KRT1P04264 644 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 CYP2D6P10635 497 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 EXOSC10Q01780 885 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 ADCY2Q08462 1091 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 SCYL3Q8IZE3 742 aa11.62□□□□□ -0.55
CD44-201ENST00000263398 ADD3Q9UEY8 706 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 DIS3Q9Y2L1 958 aaKnown RBP11.62□□□□□ -0.55
CD44-201ENST00000263398 LAMC1P11047 1609 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 GSG1L2A8MUP6 293 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 ZWINTO95229 277 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 BAG6P46379 1132 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 DBN1Q16643 649 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 RABL6Q3YEC7 729 aaPredicted RBP11.61□□□□□ -0.55
CD44-201ENST00000263398 TMEM179Q6ZVK1 233 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 DHX40Q8IX18 779 aaKnown RBP11.61□□□□□ -0.55
CD44-201ENST00000263398 CEP120Q8N960 986 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 SCYL1Q96KG9 808 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 MINPP1Q9UNW1 487 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 BCS1LQ9Y276 419 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 NEXMIFQ5QGS0 1516 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 POTEMA6NI47 508 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 ZBTB5O15062 677 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 TLR3O15455 904 aaKnown RBP11.61□□□□□ -0.55
CD44-201ENST00000263398 KCNQ4P56696 695 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 KCTD2Q14681 263 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 TMED2Q15363 201 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 MYCBPQ99417 103 aaPredicted RBP11.61□□□□□ -0.55
CD44-201ENST00000263398 PALLDQ8WX93 1383 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 LRRC7Q96NW7 1537 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 TTC26A0AVF1 554 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 USP27XA6NNY8 438 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 TEX33O43247 280 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 GPC4O75487 556 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 PALMO75781 387 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 ADCY1Q08828 1119 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 ASPHQ12797 758 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 MIS18BP1Q6P0N0 1132 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 EXOC8Q8IYI6 725 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 GUF1Q8N442 669 aaKnown RBP11.61□□□□□ -0.55
CD44-201ENST00000263398 GSDMBQ8TAX9 411 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 FAM149B1Q96BN6 582 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 SEPT10Q9P0V9 454 aa11.61□□□□□ -0.55
CD44-201ENST00000263398 EXOC1LA0A1B0GW35 172 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 LRRD1A4D1F6 860 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 LRRC53A6NM62 1247 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 PRR29P0C7W0 189 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 TFAMQ00059 246 aaKnown RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 STOX1Q6ZVD7 989 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 SH3RF3Q8TEJ3 882 aaPredicted RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 SRP68Q9UHB9 627 aaKnown RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 DNAJC12Q9UKB3 198 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 SPATA31A3Q5VYP0 1347 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 A0A1W2PQC6 194 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 MT-ND3P03897 115 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 KCNJ6P48051 423 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 CTTNQ14247 550 aaKnown RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 HIBCHQ6NVY1 386 aaPredicted RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 GADL1Q6ZQY3 521 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 SYNE4Q8N205 404 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 ARHGEF40Q8TER5 1519 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 MED7O43513 233 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 SRGAP2O75044 1071 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 IGBP1P78318 339 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 NAA30Q147X3 362 aaPredicted RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 TXNRD1Q16881 649 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 FAM83BQ5T0W9 1011 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 ZNF233A6NK53 670 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 OPHN1O60890 802 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 RPS6KA4O75676 772 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 GSTA1P08263 222 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 GSTA2P09210 222 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 HOXA13P31271 388 aaPredicted RBP11.6□□□□□ -0.55
CD44-201ENST00000263398 CCDC93Q567U6 631 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 PDIK1LQ8N165 341 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 RNF169Q8NCN4 708 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 FAM20AQ96MK3 541 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 CALN1Q9BXU9 219 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 CCDC68Q9H2F9 335 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 TBK1Q9UHD2 729 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 SYNGAP1Q96PV0 1343 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 USP31Q70CQ4 1352 aa11.6□□□□□ -0.55
CD44-201ENST00000263398 BASP1P80723 227 aaKnown RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 ATP2C1P98194 919 aaPredicted RBP11.59□□□□□ -0.55
CD44-201ENST00000263398 KCNH2Q12809 1159 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 FAM182BQ5T319 152 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 SULF1Q8IWU6 871 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 TXLNGQ9NUQ3 528 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 USP17L5A8MUK1 530 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 CPP00450 1065 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 CA4P22748 312 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 GRM4Q14833 912 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 IQCB1Q15051 598 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 E2F5Q15329 346 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 SURF1Q15526 300 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 TBC1D9BQ66K14 1250 aa11.59□□□□□ -0.55
CD44-201ENST00000263398 DCAF4Q8WV16 495 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms