RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ATF5Q9Y2D1 282 aaPredicted RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 CCDC88AQ3V6T2 1871 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 GRIN2DO15399 1336 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 USP17L10C9JJH3 530 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 G3V3G9 751 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 TULP1O00294 542 aaPredicted RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 KRT18P05783 430 aaKnown RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 EPS15P42566 896 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 RHBDL3P58872 404 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 FKBP1AP62942 108 aaKnown RBP11.05□□□□□ -0.64
LIG3-201ENST00000262327 PPFIA1Q13136 1202 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 NNTQ13423 1086 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 CFAP221Q4G0U5 840 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 DCAF8Q5TAQ9 597 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 SLC30A10Q6XR72 485 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 ADGRF4Q8IZF3 695 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 STK17AQ9UEE5 414 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 PCDHA12Q9UN75 941 aa11.05□□□□□ -0.64
LIG3-201ENST00000262327 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIG3-201ENST00000262327 LAMB1P07942 1786 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 ROBO3Q96MS0 1386 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 FXR2P51116 673 aaKnown RBP eCLIP11.04□□□□□ -0.644e-6■■■□□ 16.3
LIG3-201ENST00000262327 FKBP3Q00688 224 aaKnown RBP11.04□□□□□ -0.64
LIG3-201ENST00000262327 LRRC63Q05C16 580 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 KLHL30Q0D2K2 578 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 GPBP1Q86WP2 473 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 OR2W6PQ8NHA6 318 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 CASKIN2Q8WXE0 1202 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 FAM163AQ96GL9 167 aaPredicted RBP11.04□□□□□ -0.64
LIG3-201ENST00000262327 SGIP1Q9BQI5 828 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 AP1M1Q9BXS5 423 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 IKZF4Q9H2S9 585 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 RIOX1Q9H6W3 641 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 JMJD4Q9H9V9 463 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 ZNF287Q9HBT7 754 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 CD2APQ9Y5K6 639 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 FAM169AQ9Y6X4 670 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 ZNF233A6NK53 670 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 EBAG9O00559 213 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 KCNK3O14649 394 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 IRF6O14896 467 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 LCA5LO95447 670 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 FGFR1OPO95684 399 aaKnown RBP11.04□□□□□ -0.64
LIG3-201ENST00000262327 SLC9A1P19634 815 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 HPDP32754 393 aaPredicted RBP11.04□□□□□ -0.64
LIG3-201ENST00000262327 CASP5P51878 434 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 GTF2IP78347 998 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 HLTFQ14527 1009 aaKnown RBP eCLIP11.04□□□□□ -0.64
LIG3-201ENST00000262327 CFAP58Q5T655 872 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 PSMD1Q99460 953 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 MTMR4Q9NYA4 1195 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 PIM2Q9P1W9 311 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 MYH1P12882 1939 aa11.04□□□□□ -0.64
LIG3-201ENST00000262327 POTEFA5A3E0 1075 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 EIF3HO15372 352 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIG3-201ENST00000262327 RAD51CO43502 376 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 POTEIP0CG38 1075 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 PPP1R2P41236 205 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 SCNN1DP51172 638 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 ADAM9Q13443 819 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 FBXW10Q5XX13 1052 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 POTEGQ6S5H5 508 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 POTEEQ6S8J3 1075 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 MAATS1Q7Z4T9 603 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 RNPC3Q96LT9 517 aaKnown RBP11.03□□□□□ -0.64
LIG3-201ENST00000262327 RAB34Q9BZG1 259 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 GPR75-ASB3A0A0A6YYF3 556 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 BACH1O14867 736 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 C21orf2O43822 256 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 OPA1O60313 960 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 SHOX2O60902 331 aaPredicted RBP11.03□□□□□ -0.64
LIG3-201ENST00000262327 SEC24CP53992 1094 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 TCERG1LQ5VWI1 586 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 GJB7Q6PEY0 223 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 CEP120Q8N960 986 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 DDX4Q9NQI0 724 aaKnown RBP11.03□□□□□ -0.64
LIG3-201ENST00000262327 GOLGA8KD6RF30 607 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 NDUFAB1O14561 156 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 PJA2O43164 708 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 SERPING1P05155 500 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 PLA2G4BP0C869 781 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 PRLRP16471 622 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 PSMC6P62333 389 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 DOK7Q18PE1 504 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 TMEM119Q4V9L6 283 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 DCAF17Q5H9S7 520 aaPredicted RBP11.03□□□□□ -0.64
LIG3-201ENST00000262327 CCDC91Q7Z6B0 441 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 IFT20Q8IY31 132 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 RNF217Q8TC41 542 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 SCFD1Q8WVM8 642 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 CEP72Q9P209 647 aa11.03□□□□□ -0.64
LIG3-201ENST00000262327 SHTN1A0MZ66 631 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 GRID2IPA4D2P6 1211 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 PLCG2P16885 1265 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 PTK2Q05397 1052 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 KCNH2Q12809 1159 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 SF3A3Q12874 501 aaKnown RBP eCLIP11.02□□□□□ -0.651e-7■■■■□ 19.8
LIG3-201ENST00000262327 PABPC4Q13310 644 aaKnown RBP eCLIP11.02□□□□□ -0.65
LIG3-201ENST00000262327 ZCWPW2Q504Y3 356 aa11.02□□□□□ -0.65
LIG3-201ENST00000262327 EMBQ6PCB8 327 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms