RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CATSPER3Q86XQ3 398 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 DCAF4Q8WV16 495 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 KRT12Q99456 494 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 EHD4Q9H223 541 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 NFU1Q9UMS0 254 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 THSD7AQ9UPZ6 1657 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 AFPP02771 609 aaKnown RBP20.54■□□□□ 0.88
CPSF3-201ENST00000238112 ACTN1P12814 892 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 CARSP49589 748 aaKnown RBP20.54■□□□□ 0.88
CPSF3-201ENST00000238112 CASP5P51878 434 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 PABPC4Q13310 644 aaKnown RBP eCLIP20.54■□□□□ 0.884e-9■■■□□ 18.8
CPSF3-201ENST00000238112 GIT2Q14161 759 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 SKIDA1Q1XH10 827 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 SLFN13Q68D06 897 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 TRAF3IP3Q9Y228 551 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 BZW2Q9Y6E2 419 aaKnown RBP20.54■□□□□ 0.88
CPSF3-201ENST00000238112 ARFGEF1Q9Y6D6 1849 aa20.54■□□□□ 0.88
CPSF3-201ENST00000238112 EEF2P13639 858 aaKnown RBP20.53■□□□□ 0.88
CPSF3-201ENST00000238112 PTK2Q05397 1052 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 DDR1Q08345 913 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 NFIAQ12857 509 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 HHIPL2Q6UWX4 724 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 INPP4AQ96PE3 977 aaPredicted RBP20.53■□□□□ 0.88
CPSF3-201ENST00000238112 ZIM3Q96PE6 472 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 PLCB1Q9NQ66 1216 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 ESYT3A0FGR9 886 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 BTNL10A8MVZ5 291 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 MEIS1O00470 390 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 MEIS2O14770 477 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 CALUO43852 315 aaPredicted RBP20.53■□□□□ 0.88
CPSF3-201ENST00000238112 SLURP2P0DP57 97 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 XRCC5P13010 732 aaKnown RBP20.53■□□□□ 0.88
CPSF3-201ENST00000238112 RNASE9P60153 205 aaKnown RBP20.53■□□□□ 0.88
CPSF3-201ENST00000238112 TNNC1P63316 161 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 EXOC3L4Q17RC7 722 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 DOK7Q18PE1 504 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 APOBEC3HQ6NTF7 200 aaKnown RBP20.53■□□□□ 0.88
CPSF3-201ENST00000238112 SFR1Q86XK3 245 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 ETNPPLQ8TBG4 499 aa20.53■□□□□ 0.88
CPSF3-201ENST00000238112 MYH4Q9Y623 1939 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 G3V3G9 751 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 TBX3O15119 743 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 UCHL3P15374 230 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 SLC9A1P19634 815 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 PSMC6P62333 389 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 SPIRE1Q08AE8 756 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 RPS6KA1Q15418 735 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 IFI16Q16666 785 aaKnown RBP20.52■□□□□ 0.88
CPSF3-201ENST00000238112 TTMPQ5BVD1 217 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 CFAP58Q5T655 872 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 DCAF8Q5TAQ9 597 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 SYT2Q8N9I0 419 aaPredicted RBP20.52■□□□□ 0.88
CPSF3-201ENST00000238112 ARL8AQ96BM9 186 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 CCDC43Q96MW1 224 aaKnown RBP20.52■□□□□ 0.88
CPSF3-201ENST00000238112 REEP2Q9BRK0 252 aa20.52■□□□□ 0.88
CPSF3-201ENST00000238112 KLRG2A4D1S0 409 aaPredicted RBP20.52■□□□□ 0.87
CPSF3-201ENST00000238112 ZSCAN5CA6NGD5 496 aaPredicted RBP20.52■□□□□ 0.87
CPSF3-201ENST00000238112 POLRMTO00411 1230 aaKnown RBP20.52■□□□□ 0.87
CPSF3-201ENST00000238112 RPA1P27694 616 aa20.52■□□□□ 0.87
CPSF3-201ENST00000238112 GNGT1P63211 74 aa20.52■□□□□ 0.87
CPSF3-201ENST00000238112 SF3B2Q13435 895 aaKnown RBP20.52■□□□□ 0.87
CPSF3-201ENST00000238112 DCAF17Q5H9S7 520 aaPredicted RBP20.52■□□□□ 0.87
CPSF3-201ENST00000238112 MCTP2Q6DN12 878 aa20.52■□□□□ 0.87
CPSF3-201ENST00000238112 STK24Q9Y6E0 443 aa20.52■□□□□ 0.87
CPSF3-201ENST00000238112 LTBP1Q14766 1721 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 KCNK3O14649 394 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 MAGEA9P43362 315 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 CORO7P57737 925 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 ZNF571Q7Z3V5 609 aaPredicted RBP20.51■□□□□ 0.87
CPSF3-201ENST00000238112 IRF2BP2Q7Z5L9 587 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 USP38Q8NB14 1042 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 MKL1Q969V6 931 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 AMNQ9BXJ7 453 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 DNAJC18Q9H819 358 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 NYAP2Q9P242 653 aa20.51■□□□□ 0.87
CPSF3-201ENST00000238112 SPDYE3A6NKU9 549 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 PDXKO00764 312 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 EIF3HO15372 352 aaKnown RBP eCLIP20.5■□□□□ 0.87
CPSF3-201ENST00000238112 CLSTN1O94985 981 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 FAM153BP0C7A2 387 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 NOP2P46087 812 aaKnown RBP20.5■□□□□ 0.87
CPSF3-201ENST00000238112 FAM153CQ494X1 144 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 CERKLQ49MI3 558 aaPredicted RBP20.5■□□□□ 0.87
CPSF3-201ENST00000238112 Q4G0T1 1027 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 ZFPM1Q8IX07 1006 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 FAM153AQ9UHL3 310 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 LRRC37AA6NMS7 1700 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 QSER1Q2KHR3 1735 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 GREB1LQ9C091 1923 aaPredicted RBP20.5■□□□□ 0.87
CPSF3-201ENST00000238112 FAM196BA6NMK8 535 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 A6NNZ2 444 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 CES2O00748 559 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 MYBP10242 640 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 PON1P27169 355 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 GUCY2FP51841 1108 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 TUBB8Q3ZCM7 444 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 TCERG1LQ5VWI1 586 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 EPM2AIP1Q7L775 607 aaPredicted RBP20.5■□□□□ 0.87
CPSF3-201ENST00000238112 CASKIN2Q8WXE0 1202 aa20.5■□□□□ 0.87
CPSF3-201ENST00000238112 CRYGNQ8WXF5 182 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms