RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 USP11P51784 963 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 TNNC1P63316 161 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 ACTN3Q08043 901 aaPredicted RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 GJB7Q6PEY0 223 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 YTHDF3Q7Z739 585 aaKnown RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 WDR66Q8TBY9 1149 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 OSBPL7Q9BZF2 842 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 NUCKS1Q9H1E3 243 aaKnown RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 ZHX3Q9H4I2 956 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 EMILIN3Q9NT22 766 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 NAV1Q8NEY1 1877 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 GCOM1H8Y6P7 765 aaPredicted RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 MYZAPP0CAP1 466 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 HOXD13P35453 343 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 SLC16A2P36021 539 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 GSCP56915 257 aaPredicted RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 BYSLQ13895 437 aaKnown RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 TEX11Q8IYF3 940 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 TAF4BQ92750 862 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 SETDB2Q96T68 719 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 CDCA7Q9BWT1 371 aaPredicted RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 IKZF4Q9H2S9 585 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 VCPKMTQ9H867 229 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 NAGPAQ9UK23 515 aa13.58□□□□□ -0.24
NUP88-201ENST00000225696 NOC2LQ9Y3T9 749 aaKnown RBP13.58□□□□□ -0.24
NUP88-201ENST00000225696 SPATA31A6Q5VVP1 1343 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 BHMG1C9JSJ3 638 aaPredicted RBP13.57□□□□□ -0.24
NUP88-201ENST00000225696 TTI1O43156 1089 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 PLA2G4BP0C869 781 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 UCHL3P15374 230 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 MARSP56192 900 aaKnown RBP13.57□□□□□ -0.24
NUP88-201ENST00000225696 PPP4R3AQ6IN85 833 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 GPBP1Q86WP2 473 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 C1orf131Q8NDD1 294 aaKnown RBP13.57□□□□□ -0.24
NUP88-201ENST00000225696 UBLCP1Q8WVY7 318 aaPredicted RBP13.57□□□□□ -0.24
NUP88-201ENST00000225696 CEP63Q96MT8 703 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 RAB34Q9BZG1 259 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 JMJD4Q9H9V9 463 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 PCDHA12Q9UN75 941 aa13.57□□□□□ -0.24
NUP88-201ENST00000225696 TRAPPC3O43617 180 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 RASSF9O75901 435 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 CYP11B2P19099 503 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 NR2F2P24468 414 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 COPB2P35606 906 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 RHBDL3P58872 404 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 PSMC6P62333 389 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 SF3A3Q12874 501 aaKnown RBP eCLIP13.56□□□□□ -0.24
NUP88-201ENST00000225696 ORC2Q13416 577 aaPredicted RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 ALKBH5Q6P6C2 394 aaKnown RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 ARHGAP27Q6ZUM4 889 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 TPCN2Q8NHX9 752 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 MDM1Q8TC05 714 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 ACTRT1Q8TDG2 376 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 MYCBPQ99417 103 aaPredicted RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 NOVA2Q9UNW9 492 aaKnown RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 THRAP3Q9Y2W1 955 aaKnown RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 MYH7BA7E2Y1 1941 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 CDK5RAP2Q96SN8 1893 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 SPATA31A1Q5TZJ5 1347 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 POTEFA5A3E0 1075 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 GMNCA6NCL1 334 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 PHF20L1A8MW92 1017 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 TMCO5BA8MYB1 307 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 KRIT1O00522 736 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 MED24O75448 989 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 POTEIP0CG38 1075 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 IBSPP21815 317 aaPredicted RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 PON1P27169 355 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 NOVP48745 357 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 FOXR2Q6PJQ5 311 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 POTEGQ6S5H5 508 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 POTEEQ6S8J3 1075 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 ADGRF4Q8IZF3 695 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 TRIM31Q9BZY9 425 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 DPH5Q9H2P9 285 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 LUC7LQ9NQ29 371 aaKnown RBP13.56□□□□□ -0.24
NUP88-201ENST00000225696 MTMR4Q9NYA4 1195 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 HDAC9Q9UKV0 1011 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 LEMD3Q9Y2U8 911 aa13.56□□□□□ -0.24
NUP88-201ENST00000225696 GOLGA6L10A6NI86 522 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L15C9J2P7 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L13C9JLJ4 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L11C9JVI0 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L18D6R9N7 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L22D6RA61 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L17D6RBQ6 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L19D6RCP7 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L20D6RJB6 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 MEIS1O00470 390 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 MARCH6O60337 910 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 AKR1B1P15121 316 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 SMARCA1P28370 1054 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 RFC4P35249 363 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 EPS15P42566 896 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 CLK2P49760 499 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 MAGOHP61326 146 aaKnown RBP13.55□□□□□ -0.24
NUP88-201ENST00000225696 KCNA1Q09470 495 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L24Q0WX57 530 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 USP17L6PQ6QN14 398 aa13.55□□□□□ -0.24
NUP88-201ENST00000225696 LRIG3Q6UXM1 1119 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms