RNA–Protein interactions for RNA: ENST00000638755.1

PAX6-238, Transcript of paired box 6, human

TSL 5 BASIC

Gene PAX6, Length 1,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-238	ENST00000638755	CELF3	Q5SZQ8	465 aa	Known RBP	13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	UBALD2	Q8IYN6	164 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	SEC62	Q99442	399 aa	Known RBP	13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	SORCS3	Q9UPU3	1222 aa		13.73	□□□□□ -0.21
PAX6-238	ENST00000638755	ZFY	P08048	801 aa	Predicted RBP	13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	PDHB	P11177	359 aa		13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	TOP1	P11387	765 aa	Known RBP	13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	NOV	P48745	357 aa		13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	SIRT2	Q8IXJ6	389 aa		13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	ATP8B4	Q8TF62	1192 aa		13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	CPVL	Q9H3G5	476 aa		13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	TOMM22	Q9NS69	142 aa		13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.72	□□□□□ -0.21
PAX6-238	ENST00000638755	KIAA1671	Q9BY89	1806 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	CEP250	Q9BV73	2442 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	SMARCA5	O60264	1052 aa	Predicted RBP	13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	CHRNA1	P02708	482 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	LGALS2	P05162	132 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	GOLGA8H	P0CJ92	632 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	MYCL	P12524	364 aa	Predicted RBP	13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	TEC	P42680	631 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	ZNF543	Q08ER8	600 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	PUM1	Q14671	1186 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	FAM26D	Q5JW98	314 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	CMTR2	Q8IYT2	770 aa	Known RBP	13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	FLCN	Q8NFG4	579 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	PANK1	Q8TE04	598 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	UBA5	Q9GZZ9	404 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	S1PR5	Q9H228	398 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	MLXIP	Q9HAP2	919 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	PXMP2	Q9NR77	195 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	ECHDC1	Q9NTX5	307 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	NR2E1	Q9Y466	385 aa		13.71	□□□□□ -0.21
PAX6-238	ENST00000638755	TTC3	P53804	2025 aa		13.71	□□□□□ -0.22
PAX6-238	ENST00000638755	ABCB11	O95342	1321 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	SPTBN2	O15020	2390 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	GNAT1	P11488	350 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	CLCN5	P51795	746 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	ARHGAP4	P98171	946 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	SP2	Q02086	613 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	LPIN1	Q14693	890 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	ANGPT1	Q15389	498 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	RRP12	Q5JTH9	1297 aa	Known RBP	13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	TSHZ3	Q63HK5	1081 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	LLGL2	Q6P1M3	1020 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	MCF2L2	Q86YR7	1114 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	HINFP	Q9BQA5	517 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	CDH22	Q9UJ99	828 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	PLXNA4	Q9HCM2	1894 aa		13.7	□□□□□ -0.22
PAX6-238	ENST00000638755	ZFHX4	Q86UP3	3567 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	C2CD4D	B7Z1M9	353 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	LMNA	P02545	664 aa	Known RBP	13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	ASGR2	P07307	311 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	SRGAP2B	P0DMP2	458 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	UBA1	P22314	1058 aa	Known RBP	13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	CDC37	Q16543	378 aa	Predicted RBP	13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	DUSP6	Q16828	381 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	ANKRD54	Q6NXT1	300 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	ZFP91	Q96JP5	570 aa	Predicted RBP	13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	LRRCC1	Q9C099	1032 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	BCAS3	Q9H6U6	928 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	EHMT1	Q9H9B1	1298 aa		13.69	□□□□□ -0.22
PAX6-238	ENST00000638755	CCDC171	Q6TFL3	1326 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	FRYL	O94915	3013 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	NOP56	O00567	594 aa	Known RBP	13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	PI15	O43692	258 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	CFB	P00751	764 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	AR	P10275	920 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	HSPD1	P10809	573 aa	Known RBP	13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	IBSP	P21815	317 aa	Predicted RBP	13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	GATM	P50440	423 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	ERVFC1	P60507	584 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	SPOUT1	Q5T280	376 aa	Known RBP	13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	SYCE2	Q6PIF2	218 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	KCNV1	Q6PIU1	500 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	RUFY4	Q6ZNE9	571 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	TRIM50	Q86XT4	487 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	LMBR1	Q8WVP7	490 aa		13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	CDCA3	Q99618	268 aa	Predicted RBP	13.68	□□□□□ -0.22
PAX6-238	ENST00000638755	FSD2	A1L4K1	749 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	ORC4	O43929	436 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	CWF19L1	Q69YN2	538 aa	Known RBP	13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	NPAS4	Q8IUM7	802 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	CCDC105	Q8IYK2	499 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	LINC01599	Q8WXQ3	324 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	USP26	Q9BXU7	913 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	MAF1	Q9H063	256 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	PCDHB12	Q9Y5F1	795 aa		13.67	□□□□□ -0.22
PAX6-238	ENST00000638755	BAHCC1	Q9P281	2608 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	FOXP2	O15409	715 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	SNHG28	P0DPA3	235 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	CD52	P31358	61 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	ADAM17	P78536	824 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	FBXO47	Q5MNV8	452 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	UTP14C	Q5TAP6	766 aa	Known RBP	13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	TMEM184A	Q6ZMB5	413 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	CRIPAK	Q8N1N5	446 aa		13.66	□□□□□ -0.22
PAX6-238	ENST00000638755	CYP2W1	Q8TAV3	490 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms