RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 DNM3Q9UQ16 869 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 MTO1Q9Y2Z2 717 aaKnown RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 AFG3L2Q9Y4W6 797 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 PCDHB13Q9Y5F0 798 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 CAAP1Q9H8G2 361 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 PARVGQ9HBI0 331 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 MYO9BQ13459 2157 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 ECE1P42892 770 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.42□□□□□ -0.9
TTC28-208ENST00000612946 AASDHQ4L235 1098 aaPredicted RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 FBXW10Q5XX13 1052 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 ZSCAN29Q8IWY8 852 aaPredicted RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 REXO1Q8N1G1 1221 aaKnown RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 KRT82Q9NSB4 513 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 PPARGC1AQ9UBK2 798 aaKnown RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 CROCC2H7BZ55 1655 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 CYTH3O43739 400 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 DCTN2Q13561 401 aaKnown RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 PROM2Q8N271 834 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 CIDEBQ9UHD4 219 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 HPCAL4Q9UM19 191 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 STX8Q9UNK0 236 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 KDM7AQ6ZMT4 941 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 CDR2LQ86X02 465 aaPredicted RBP9.42□□□□□ -0.9
TTC28-208ENST00000612946 RSPH1Q8WYR4 309 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 SH3GL1Q99961 368 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 DCLRE1BQ9H816 532 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 FANCEQ9HB96 536 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 C1orf112Q9NSG2 853 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 PNMA2Q9UL42 364 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 DPH5Q9H2P9 285 aa9.42□□□□□ -0.9
TTC28-208ENST00000612946 CDC27P30260 824 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 YWHAGP61981 247 aaKnown RBP eCLIP9.41□□□□□ -0.9
TTC28-208ENST00000612946 PATL1Q86TB9 770 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 NHEJ1Q9H9Q4 299 aaPredicted RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 MRPL47Q9HD33 250 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 PCDHA13Q9Y5I0 950 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 KPNA7A9QM74 516 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 H0Y3Z8 333 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 CCNT1O60563 726 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 DDIT3P35638 169 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 TNNI2P48788 182 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 NAIF1Q69YI7 327 aaPredicted RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 FAM167BQ9BTA0 163 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 MED23Q9ULK4 1368 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 VAMP4O75379 141 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ME3Q16798 604 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ZBTB41Q5SVQ8 909 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 MAGED4Q96JG8 741 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 MRPL44Q9H9J2 332 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 RHBDL2Q9NX52 303 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 BIN2Q9UBW5 565 aaPredicted RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 KIAA0586Q9BVV6 1533 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 MAGEB6P1A0A0J9YX57 407 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ZBBXA8MT70 800 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 PLTPP55058 493 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 PASD1Q8IV76 773 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ZNF555Q8NEP9 628 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 SCG3Q8WXD2 468 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 DHX38Q92620 1227 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 SCYL1Q96KG9 808 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 PFASO15067 1338 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 SNRPA1P09661 255 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 ARL4CP56559 192 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ZCWPW2Q504Y3 356 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 MSL3Q8N5Y2 521 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 ASCC2Q9H1I8 757 aaPredicted RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 TSPAN9O75954 239 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 IFNB1P01574 187 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 PLS3P13797 630 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 PECAM1P16284 738 aaPredicted RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 SLC9C2Q5TAH2 1124 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 TRPV6Q9H1D0 765 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 TIMMDC1Q9NPL8 285 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 STRIP2Q9ULQ0 834 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 RFX7Q2KHR2 1363 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 NDUFA8P51970 172 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 KRT76Q01546 638 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 LSG1Q9H089 658 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 DLGAP2Q9P1A6 1054 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 RSL24D1Q9UHA3 163 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 ASXL2Q76L83 1435 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 HNRNPCL2B2RXH8 293 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 SMAPO00193 183 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 STX7O15400 261 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 ASNA1O43681 348 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 RGS2P41220 211 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ZNF658Q5TYW1 1059 aaPredicted RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 BHMT2Q9H2M3 363 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 FAM200BP0CF97 657 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 TTC6Q86TZ1 520 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 ZNF579Q8NAF0 562 aaKnown RBP9.41□□□□□ -0.9
TTC28-208ENST00000612946 SUN2Q9UH99 717 aa9.41□□□□□ -0.9
TTC28-208ENST00000612946 GOLGA8JA6NMD2 632 aa9.4□□□□□ -0.9
TTC28-208ENST00000612946 hCG_1984214I3L0E3 225 aa9.4□□□□□ -0.9
TTC28-208ENST00000612946 FSBPO95073 299 aa9.4□□□□□ -0.9
TTC28-208ENST00000612946 TAC1P20366 129 aa9.4□□□□□ -0.9
TTC28-208ENST00000612946 COPS2P61201 443 aa9.4□□□□□ -0.9
TTC28-208ENST00000612946 TCP11X2Q5H9J9 407 aa9.4□□□□□ -0.9
TTC28-208ENST00000612946 GPR141Q7Z602 305 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms