RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 IQCA1LA6NCM1 817 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 SORBS3O60504 671 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 IGFBP6P24592 240 aaPredicted RBP6.24□□□□□ -1.41
LINC00540-201ENST00000611481 MAPKAPK2P49137 400 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 SLURP1P55000 103 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 TMF1P82094 1093 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 RTP5Q14D33 572 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 PLEKHN1Q494U1 663 aaPredicted RBP6.24□□□□□ -1.41
LINC00540-201ENST00000611481 ZC3H14Q6PJT7 736 aaKnown RBP6.24□□□□□ -1.41
LINC00540-201ENST00000611481 CNTROBQ8N137 903 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 ZNF512BQ96KM6 892 aaPredicted RBP6.24□□□□□ -1.41
LINC00540-201ENST00000611481 IMPACTQ9P2X3 320 aa6.24□□□□□ -1.41
LINC00540-201ENST00000611481 MEIS1O00470 390 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 PRICKLE3O43900 615 aaPredicted RBP6.23□□□□□ -1.41
LINC00540-201ENST00000611481 VAV1P15498 845 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 ITGAEP38570 1179 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 LIMS1P48059 325 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 TARBP2Q15633 366 aaKnown RBP6.23□□□□□ -1.41
LINC00540-201ENST00000611481 ZFYVE27Q5T4F4 411 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 KCNH5Q8NCM2 988 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 ATG4CQ96DT6 458 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 KRTAP9-8Q9BYQ0 159 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 MKRN2Q9H000 416 aaKnown RBP6.23□□□□□ -1.41
LINC00540-201ENST00000611481 EHMT1Q9H9B1 1298 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 AP5S1Q9NUS5 200 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 GFOD1Q9NXC2 390 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 FBXL21Q9UKT6 434 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 CNOT11Q9UKZ1 510 aaKnown RBP6.23□□□□□ -1.41
LINC00540-201ENST00000611481 PCDHB12Q9Y5F1 795 aa6.23□□□□□ -1.41
LINC00540-201ENST00000611481 A0A1W2PQ27 194 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 A0A1W2PQ64 194 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 A0A1W2PQC6 194 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 A0A1W2PQD8 194 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 INSRRP14616 1297 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 CTSKP43235 329 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 MFAP1P55081 439 aaKnown RBP6.22□□□□□ -1.41
LINC00540-201ENST00000611481 ZNF200P98182 395 aaPredicted RBP6.22□□□□□ -1.41
LINC00540-201ENST00000611481 FBXL19Q6PCT2 694 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 NLRC3Q7RTR2 1065 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 JMJD8Q96S16 334 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 MRS2Q9HD23 443 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 DDX21Q9NR30 783 aaKnown RBP eCLIP6.22□□□□□ -1.41
LINC00540-201ENST00000611481 KCNQ5Q9NR82 932 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 KBTBD4Q9NVX7 518 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 PRR13Q9NZ81 148 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 VTI1BQ9UEU0 232 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 MYRFQ9Y2G1 1151 aa6.22□□□□□ -1.41
LINC00540-201ENST00000611481 SUPT16HQ9Y5B9 1047 aaKnown RBP6.22□□□□□ -1.41
LINC00540-201ENST00000611481 K7ESM1 405 aa6.21□□□□□ -1.42
LINC00540-201ENST00000611481 UBXN11Q5T124 520 aa6.21□□□□□ -1.42
LINC00540-201ENST00000611481 TMEM52Q8NDY8 209 aa6.21□□□□□ -1.42
LINC00540-201ENST00000611481 GPR20Q99678 358 aa6.21□□□□□ -1.42
LINC00540-201ENST00000611481 GZF1Q9H116 711 aaPredicted RBP6.21□□□□□ -1.42
LINC00540-201ENST00000611481 USP40Q9NVE5 1235 aa6.21□□□□□ -1.42
LINC00540-201ENST00000611481 PALD1Q9ULE6 856 aa6.21□□□□□ -1.42
LINC00540-201ENST00000611481 ADGRB1O14514 1584 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 GREM1O60565 184 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 IGSF3O75054 1194 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 CYBBP04839 570 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 GSNP06396 782 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 MSL3P1P0C860 447 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 GYS1P13807 737 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 EIF4A3P38919 411 aaKnown RBP6.2□□□□□ -1.42
LINC00540-201ENST00000611481 MVKQ03426 396 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 AUHQ13825 339 aaKnown RBP6.2□□□□□ -1.42
LINC00540-201ENST00000611481 PUM1Q14671 1186 aaKnown RBP eCLIP6.2□□□□□ -1.42
LINC00540-201ENST00000611481 HLA-DQA1Q5Y7H0 255 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 PAQR3Q6TCH7 311 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 CRTC3Q6UUV7 619 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 HHIPL2Q6UWX4 724 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 CTU1Q7Z7A3 348 aaKnown RBP6.2□□□□□ -1.42
LINC00540-201ENST00000611481 TMEM192Q8IY95 271 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 NAT16Q8N8M0 369 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 ZCRB1Q8TBF4 217 aaKnown RBP6.2□□□□□ -1.42
LINC00540-201ENST00000611481 SUSD2Q9UGT4 822 aa6.2□□□□□ -1.42
LINC00540-201ENST00000611481 COL6A3P12111 3177 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 HMGB1P09429 215 aaKnown RBP6.19□□□□□ -1.42
LINC00540-201ENST00000611481 EPHX2P34913 555 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 LRRFIP1Q32MZ4 808 aaKnown RBP6.19□□□□□ -1.42
LINC00540-201ENST00000611481 VWA3BQ502W6 1294 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 RTP2Q5QGT7 225 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 LIPIQ6XZB0 460 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 SND1Q7KZF4 910 aaKnown RBP eCLIP6.19□□□□□ -1.42
LINC00540-201ENST00000611481 ERMP1Q7Z2K6 904 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 LSRQ86X29 649 aaPredicted RBP6.19□□□□□ -1.42
LINC00540-201ENST00000611481 JAMLQ86YT9 394 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 SMARCC1Q92922 1105 aaPredicted RBP6.19□□□□□ -1.42
LINC00540-201ENST00000611481 SLC6A18Q96N87 628 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 COPRSQ9NQ92 184 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 HACL1Q9UJ83 578 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 SCN4AP35499 1836 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 NFAT5O94916 1531 aa6.19□□□□□ -1.42
LINC00540-201ENST00000611481 A0A1W2PQJ5 194 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 SRGAP3O43295 1099 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 NME1P15531 152 aaKnown RBP6.18□□□□□ -1.42
LINC00540-201ENST00000611481 RBM25P49756 843 aaKnown RBP6.18□□□□□ -1.42
LINC00540-201ENST00000611481 FOXO4P98177 505 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 DDR1Q08345 913 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 NT5DC1Q5TFE4 455 aa6.18□□□□□ -1.42
LINC00540-201ENST00000611481 CST9Q5W186 159 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms