RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 POLR3CQ9BUI4 534 aaPredicted RBP16.44■□□□□ 0.22
VRK3-212ENST00000596814 KATNBL1Q9H079 304 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 CUEDC2Q9H467 287 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 SLC9A2Q9UBY0 812 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 HOOK1Q9UJC3 728 aaKnown RBP16.44■□□□□ 0.22
VRK3-212ENST00000596814 SAMM50Q9Y512 469 aa16.44■□□□□ 0.22
VRK3-212ENST00000596814 CCNE2O96020 404 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 MAP2K1Q02750 393 aaPredicted RBP16.43■□□□□ 0.22
VRK3-212ENST00000596814 CYP4A11Q02928 519 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 ECM1Q16610 540 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 NAALADL2Q58DX5 795 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 PDXDC2PQ6P474 469 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 CYFIP1Q7L576 1253 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 CATSPER3Q86XQ3 398 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 SMAP1Q8IYB5 467 aaPredicted RBP16.43■□□□□ 0.22
VRK3-212ENST00000596814 RDM1Q8NG50 284 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 CD99L2Q8TCZ2 262 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 ABHD16BQ9H3Z7 469 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 TUFT1Q9NNX1 390 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 FLRT1Q9NZU1 646 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 STK17AQ9UEE5 414 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 DDX41Q9UJV9 622 aaKnown RBP16.43■□□□□ 0.22
VRK3-212ENST00000596814 WDR81Q562E7 1941 aa16.43■□□□□ 0.22
VRK3-212ENST00000596814 POTEFA5A3E0 1075 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 SORBS3O60504 671 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 LETM1O95202 739 aaPredicted RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 GGPS1O95749 300 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 SPATA31C1P0DKV0 1188 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 XRCC5P13010 732 aaKnown RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 PRKCZQ05513 592 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 CCL14Q16627 93 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 LY6KQ17RY6 165 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 TAPT1Q6NXT6 567 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 CCDC62Q6P9F0 684 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 POTEGQ6S5H5 508 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 ELOA2Q8IYF1 753 aaPredicted RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 LRRC15Q8TF66 581 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 DYDC2Q96IM9 177 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 HSD17B14Q9BPX1 270 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 BEGAINQ9BUH8 593 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 BCAS3Q9H6U6 928 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 MAGEF1Q9HAY2 307 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 PDGFCQ9NRA1 345 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 RGL1Q9NZL6 768 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 ZHX1Q9UKY1 873 aaPredicted RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 GABRQQ9UN88 632 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 KIAA1024Q9UPX6 916 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 RBM47A0AV96 593 aaKnown RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 SYCE3A1L190 88 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 FARP2O94887 1054 aaPredicted RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 TXNP10599 105 aaKnown RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 FLT3LGP49771 235 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 CAP1Q01518 475 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 SP4Q02446 784 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 IRF5Q13568 498 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 ACVR2BQ13705 512 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 METTL7BQ6UX53 244 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 RBM43Q6ZSC3 357 aaKnown RBP16.42■□□□□ 0.22
VRK3-212ENST00000596814 CKAP2LQ8IYA6 745 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 ERO1AQ96HE7 468 aa16.42■□□□□ 0.22
VRK3-212ENST00000596814 LOXHD1Q8IVV2 1947 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 FKTNO75072 461 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 MUTP22033 750 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 ACTR2P61160 394 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 CTTNQ14247 550 aaKnown RBP16.41■□□□□ 0.22
VRK3-212ENST00000596814 POSTNQ15063 836 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 SH3RF1Q7Z6J0 888 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 GRAMD1CQ8IYS0 662 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 LARP4BQ92615 738 aaKnown RBP16.41■□□□□ 0.22
VRK3-212ENST00000596814 RAD54LQ92698 747 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 PAGE5Q96GU1 130 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 LXNQ9BS40 222 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 MLXIPQ9HAP2 919 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 BLOC1S4Q9NUP1 217 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 PCDHA10Q9Y5I2 948 aa16.41■□□□□ 0.22
VRK3-212ENST00000596814 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.4■□□□□ 0.22
VRK3-212ENST00000596814 FOXN1O15353 648 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 SLITRK3O94933 977 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 P4HBP07237 508 aaKnown RBP16.4■□□□□ 0.22
VRK3-212ENST00000596814 HOXD10P28358 340 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 CYP2C19P33261 490 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 ADCYAP1R1P41586 468 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 AFMP43652 599 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 PNOCQ13519 176 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 CELF3Q5SZQ8 465 aaKnown RBP16.4■□□□□ 0.22
VRK3-212ENST00000596814 KCNK18Q7Z418 384 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 TPH2Q8IWU9 490 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 KCTD17Q8N5Z5 321 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 BANK1Q8NDB2 785 aa16.4■□□□□ 0.22
VRK3-212ENST00000596814 ZNF296Q8WUU4 475 aaPredicted RBP16.4■□□□□ 0.22
VRK3-212ENST00000596814 IGHA2P01877 340 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 PSAPP07602 524 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 MIS18BP1Q6P0N0 1132 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 KBTBD4Q9NVX7 518 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 SRRDQ9UH36 339 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 GNRH1P01148 92 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 SUPT20HL2P0C7V6 817 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 PRR29P0C7W0 189 aa16.39■□□□□ 0.21
VRK3-212ENST00000596814 QARSP47897 775 aaKnown RBP16.39■□□□□ 0.21
VRK3-212ENST00000596814 MDM2Q00987 491 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms