RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 EDIL3O43854 480 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 MARCH6O60337 910 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 B4GALT4O60513 344 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 CCNT1O60563 726 aaKnown RBP12.57□□□□□ -0.4
LIG1-211ENST00000596457 RAG1P15918 1043 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 CIITAP33076 1130 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 MAGEA10P43363 369 aaPredicted RBP12.57□□□□□ -0.4
LIG1-211ENST00000596457 SETQ01105 290 aaPredicted RBP12.57□□□□□ -0.4
LIG1-211ENST00000596457 ANKRD33Q7Z3H0 272 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 NEK8Q86SG6 692 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 TRIM50Q86XT4 487 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 FAM126BQ8IXS8 530 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 TDHQ8IZJ6 230 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 DEFB123Q8N688 67 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 C7orf31Q8N865 590 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 SLC43A3Q8NBI5 491 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 GJA10Q969M2 543 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 TRIM43Q96BQ3 446 aaPredicted RBP12.57□□□□□ -0.4
LIG1-211ENST00000596457 TOX2Q96NM4 488 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 PPP1R12CQ9BZL4 782 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 UBE2OQ9C0C9 1292 aaKnown RBP12.57□□□□□ -0.4
LIG1-211ENST00000596457 TRMT13Q9NUP7 481 aaKnown RBP12.57□□□□□ -0.4
LIG1-211ENST00000596457 HDAC6Q9UBN7 1215 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 TCEAL9Q9UHQ7 104 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 RAPGEFL1Q9UHV5 662 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 NOD1Q9Y239 953 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 NFASCO94856 1347 aa12.57□□□□□ -0.4
LIG1-211ENST00000596457 SCN10AQ9Y5Y9 1956 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 H3BRB1 525 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 MSH4O15457 936 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 CYP2C9P11712 490 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 MARK3P27448 753 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 LRIT3Q3SXY7 679 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 Q7L0L9 218 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 GLG1Q92896 1179 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 BADQ92934 168 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 C16orf70Q9BSU1 422 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 TUT1Q9H6E5 874 aaKnown RBP12.56□□□□□ -0.4
LIG1-211ENST00000596457 DDX25Q9UHL0 483 aaKnown RBP12.56□□□□□ -0.4
LIG1-211ENST00000596457 KIF3AQ9Y496 699 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 SAMM50Q9Y512 469 aa12.56□□□□□ -0.4
LIG1-211ENST00000596457 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.56□□□□□ -0.4
LIG1-211ENST00000596457 BACH1O14867 736 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 CHMP2AO43633 222 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 CD4P01730 458 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 ACTR2P61160 394 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 ZNF200P98182 395 aaPredicted RBP12.55□□□□□ -0.4
LIG1-211ENST00000596457 PTGISQ16647 500 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 Q4G0T1 1027 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 MCTP1Q6DN14 999 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 GDF6Q6KF10 455 aaPredicted RBP12.55□□□□□ -0.4
LIG1-211ENST00000596457 NFRKBQ6P4R8 1299 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 TRMT1LQ7Z2T5 733 aaKnown RBP12.55□□□□□ -0.4
LIG1-211ENST00000596457 FBXO18Q8NFZ0 1043 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 SEZ6LQ9BYH1 1024 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 AZI2Q9H6S1 392 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 TBC1D22BQ9NU19 505 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 ZNF215Q9UL58 517 aaPredicted RBP12.55□□□□□ -0.4
LIG1-211ENST00000596457 LTBP2Q14767 1821 aa12.55□□□□□ -0.4
LIG1-211ENST00000596457 TRIP12Q14669 1992 aaPredicted RBP12.54□□□□□ -0.4
LIG1-211ENST00000596457 KAT6AQ92794 2004 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 H3BQV1 296 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 HAS3O00219 553 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 DHX15O43143 795 aaKnown RBP12.54□□□□□ -0.4
LIG1-211ENST00000596457 SLC37A4O43826 429 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 GAS7O60861 476 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 CCNE2O96020 404 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 F2P00734 622 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 SUPT20HL2P0C7V6 817 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 SMIM10L2AP0DMW4 78 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 SMIM10L2BP0DMW5 78 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 HOXD8P13378 290 aaPredicted RBP12.54□□□□□ -0.4
LIG1-211ENST00000596457 ITGB8P26012 769 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 CYP2C18P33260 490 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 PTPN11Q06124 597 aaPredicted RBP12.54□□□□□ -0.4
LIG1-211ENST00000596457 LRCH2Q5VUJ6 765 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 TNFRSF25Q93038 417 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 LENG9Q96B70 501 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 NAP1L4Q99733 375 aaKnown RBP12.54□□□□□ -0.4
LIG1-211ENST00000596457 TEKT3Q9BXF9 490 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 RNPEPQ9H4A4 650 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 SMARCAD1Q9H4L7 1026 aa12.54□□□□□ -0.4
LIG1-211ENST00000596457 CYP3A7-CYP3A51PA0A087WV96 503 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 C17orf102A2RUQ5 167 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 K7ELQ4 463 aaPredicted RBP12.53□□□□□ -0.4
LIG1-211ENST00000596457 KIAA0355O15063 1070 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 TIMP1P01033 207 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 CYP3A7P24462 503 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 PLA2G5P39877 138 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 STAT5BP51692 787 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 CCL23P55773 120 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 IGBP1P78318 339 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 FAM160B1Q5W0V3 765 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 LARP1BQ659C4 914 aaKnown RBP12.53□□□□□ -0.4
LIG1-211ENST00000596457 SWSAP1Q6NVH7 229 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 MIS18BP1Q6P0N0 1132 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 POTEDQ86YR6 584 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 HSCBQ8IWL3 235 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 CKAP2LQ8IYA6 745 aa12.53□□□□□ -0.4
LIG1-211ENST00000596457 SLC5A5Q92911 643 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms