RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CCDC148Q8NFR7 591 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 CDX2Q99626 313 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-203ENST00000593582 SDF4Q9BRK5 362 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 RNPEPQ9H4A4 650 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 EYSQ5T1H1 3165 aa17.42■□□□□ 0.38
TRIM28-203ENST00000593582 MEIS1O00470 390 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 ATP2A2P16615 1042 aaKnown RBP17.41■□□□□ 0.38
TRIM28-203ENST00000593582 THPOP40225 353 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 ANAPC15P60006 121 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 SSRP1Q08945 709 aaKnown RBP17.41■□□□□ 0.38
TRIM28-203ENST00000593582 GLG1Q92896 1179 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 LARP6Q9BRS8 491 aaKnown RBP17.41■□□□□ 0.38
TRIM28-203ENST00000593582 ZNF576Q9H609 170 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 SETD4Q9NVD3 440 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 ERAP1Q9NZ08 941 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 SLC9A2Q9UBY0 812 aa17.41■□□□□ 0.38
TRIM28-203ENST00000593582 GSTTP1A0A1W2PQM5 241 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 TREHO43280 583 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 BAIAP3O94812 1187 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 ARP10275 920 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 STK3Q13188 491 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 TRIM71Q2Q1W2 868 aaKnown RBP17.4■□□□□ 0.38
TRIM28-203ENST00000593582 ZNF618Q5T7W0 954 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 NIPA1Q7RTP0 329 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 WNT8BQ93098 351 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 SMARCAD1Q9H4L7 1026 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 AGO4Q9HCK5 861 aaKnown RBP17.4■□□□□ 0.38
TRIM28-203ENST00000593582 SH3GLB2Q9NR46 395 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 VPS54Q9P1Q0 977 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 NFASCO94856 1347 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 NRCAMQ92823 1304 aa17.4■□□□□ 0.38
TRIM28-203ENST00000593582 TANC1Q9C0D5 1861 aa17.39■□□□□ 0.38
TRIM28-203ENST00000593582 CXCL10P02778 98 aa17.39■□□□□ 0.37
TRIM28-203ENST00000593582 CYP3A4P08684 503 aa17.39■□□□□ 0.37
TRIM28-203ENST00000593582 GPNMBQ14956 572 aa17.39■□□□□ 0.37
TRIM28-203ENST00000593582 SLC9A7Q96T83 725 aa17.39■□□□□ 0.37
TRIM28-203ENST00000593582 AZI2Q9H6S1 392 aa17.39■□□□□ 0.37
TRIM28-203ENST00000593582 EMSYQ7Z589 1322 aa17.39■□□□□ 0.37
TRIM28-203ENST00000593582 DOCK5Q9H7D0 1870 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 RSPH10B2B2RC85 870 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 FAM86B1E9PN63 330 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 NBNO60934 754 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 CAND2O75155 1236 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 DEXIO95424 95 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 FAM86B2P0C5J1 330 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 RSPH10BP0C881 870 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 MARK3P27448 753 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 KCNJ6P48051 423 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 RABGGTBP53611 331 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 NLRP5P59047 1200 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 ITGB3BPQ13352 177 aaPredicted RBP17.38■□□□□ 0.37
TRIM28-203ENST00000593582 GRIN2CQ14957 1233 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 CNKSR3Q6P9H4 555 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 PLA2G4DQ86XP0 818 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 PHOSPHO2Q8TCD6 241 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 LMBR1Q8WVP7 490 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 CRYGNQ8WXF5 182 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 MYLIPQ8WY64 445 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 SLC28A3Q9HAS3 691 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 PCDHA11Q9Y5I1 949 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 CHD9Q3L8U1 2897 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 A0A0C4DFX4 3053 aa17.38■□□□□ 0.37
TRIM28-203ENST00000593582 SCN5AQ14524 2016 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 ADAMTS3O15072 1205 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 CDKL5O76039 1030 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 FOSL2P15408 326 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 ACTR2P61160 394 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 SETQ01105 290 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-203ENST00000593582 PPFIA1Q13136 1202 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 ANKRD1Q15327 319 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 TRAF7Q6Q0C0 670 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 RASGRP4Q8TDF6 673 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 TNPO1Q92973 898 aaKnown RBP17.37■□□□□ 0.37
TRIM28-203ENST00000593582 SLKQ9H2G2 1235 aaPredicted RBP17.37■□□□□ 0.37
TRIM28-203ENST00000593582 NKX2-4Q9H2Z4 354 aa17.37■□□□□ 0.37
TRIM28-203ENST00000593582 YBX2Q9Y2T7 364 aaKnown RBP17.37■□□□□ 0.37
TRIM28-203ENST00000593582 ABHD14A-ACY1A0A1B0GW23 586 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 IPO5O00410 1097 aaKnown RBP17.36■□□□□ 0.37
TRIM28-203ENST00000593582 EFCAB14O75071 495 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 LGR5O75473 907 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 ADAM17P78536 824 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 IKBKEQ14164 716 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 MBTPS1Q14703 1052 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 TAF2Q6P1X5 1199 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 SLC17A8Q8NDX2 589 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 UNC80Q8N2C7 3258 aa17.36■□□□□ 0.37
TRIM28-203ENST00000593582 TRIP12Q14669 1992 aaPredicted RBP17.36■□□□□ 0.37
TRIM28-203ENST00000593582 IGLV3-22A0A075B6J6 115 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 KIF28PB7ZC32 967 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 DDX39AO00148 427 aaKnown RBP17.35■□□□□ 0.37
TRIM28-203ENST00000593582 CTSHP09668 335 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 WDR5P61964 334 aaKnown RBP17.35■□□□□ 0.37
TRIM28-203ENST00000593582 SCRN1Q12765 414 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 GRIK4Q16099 956 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 PPP2R2DQ66LE6 453 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 PLPPR4Q7Z2D5 763 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 HERC6Q8IVU3 1022 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 FAM177A1Q8N128 213 aaPredicted RBP17.35■□□□□ 0.37
TRIM28-203ENST00000593582 PCYT2Q99447 389 aa17.35■□□□□ 0.37
TRIM28-203ENST00000593582 ZNF577Q9BSK1 485 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms