RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 RAC2P15153 192 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 IRX6P78412 446 aaPredicted RBP4.29□□□□□ -1.72
ZNF540-207ENST00000589285 RAB3GAP1Q15042 981 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 SF3A1Q15459 793 aaKnown RBP4.29□□□□□ -1.72
ZNF540-207ENST00000589285 SLC35F1Q5T1Q4 408 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 HDGFL2Q7Z4V5 671 aaPredicted RBP4.29□□□□□ -1.72
ZNF540-207ENST00000589285 FLAD1Q8NFF5 587 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 CYP26B1Q9NR63 512 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 ZFYVE9O95405 1425 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 A0A1W2PQJ5 194 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 KRT1P04264 644 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 GLI1P08151 1106 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 ABHD17CQ6PCB6 329 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 POMZP3Q6PJE2 187 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 RPTNQ6XPR3 784 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 TMC6Q7Z403 805 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 SLC7A14Q8TBB6 771 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 AARSD1Q9BTE6 412 aaKnown RBP4.29□□□□□ -1.72
ZNF540-207ENST00000589285 MSH6P52701 1360 aa4.29□□□□□ -1.72
ZNF540-207ENST00000589285 PAMP19021 973 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 VIPR1P32241 457 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 UBXN4Q92575 508 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 SYTL4Q96C24 671 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 SCLYQ96I15 445 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 YBX2Q9Y2T7 364 aaKnown RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 CD2APQ9Y5K6 639 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 LRP5O75197 1615 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 NSD3Q9BZ95 1437 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 CRTAMO95727 393 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 STAT5AP42229 794 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 MTHFSP49914 203 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 RASGRF1Q13972 1273 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 KRTAP1-3Q8IUG1 177 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 KSR1Q8IVT5 923 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 OXR1Q8N573 874 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 ZBTB38Q8NAP3 1195 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 PLEKHO2Q8TD55 490 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 RNPC3Q96LT9 517 aaKnown RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 CD244Q9BZW8 370 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 CDIP1Q9H305 208 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 DCP1AQ9NPI6 582 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 TERF2IPQ9NYB0 399 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 MARF1Q9Y4F3 1742 aaKnown RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 KTN1Q86UP2 1357 aaKnown RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 PLEKHG1Q9ULL1 1385 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 COL16A1Q07092 1604 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 F8W031 263 aaPredicted RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 NKRFO15226 690 aaKnown RBP eCLIP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 DUSP4Q13115 394 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 SSPNQ14714 243 aa4.28□□□□□ -1.72
ZNF540-207ENST00000589285 CISD2Q8N5K1 135 aaKnown RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 MRPS23Q9Y3D9 190 aaKnown RBP4.28□□□□□ -1.72
ZNF540-207ENST00000589285 A0A1W2PP64 1363 aa4.28□□□□□ -1.73
ZNF540-207ENST00000589285 ASXL1Q8IXJ9 1541 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 RGPD3A6NKT7 1758 aaPredicted RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 RGPD4Q7Z3J3 1758 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 FITM1A5D6W6 292 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 ETV2O00321 342 aaPredicted RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 FYB1O15117 783 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 TBC1D8O95759 1140 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 U2AF1L5P0DN76 240 aaPredicted RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 PRR5P85299 388 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 U2AF1Q01081 240 aaKnown RBP eCLIP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 TM4SF20Q53R12 229 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 LZTR1Q8N653 840 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 UBR7Q8N806 425 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 ARRDC4Q8NCT1 418 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 KRTAP4-12Q9BQ66 201 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 MCOLN1Q9GZU1 580 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 FANCLQ9NW38 375 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 KLHL14Q9P2G3 628 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 PPIP5K1Q6PFW1 1433 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 TRPM1Q7Z4N2 1603 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 A0A1B0GTL3 188 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 WTIPA6NIX2 430 aaPredicted RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 IRS4O14654 1257 aaPredicted RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 AFMP43652 599 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 NOP2P46087 812 aaKnown RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 CPZQ66K79 652 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 RCSD1Q6JBY9 416 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 KRTAP19-1Q8IUB9 90 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 ANKS4BQ8N8V4 417 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 DIO2Q92813 273 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 CLDND1Q9NY35 253 aa4.27□□□□□ -1.73
ZNF540-207ENST00000589285 LAS1LQ9Y4W2 734 aaKnown RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 LRPPRCP42704 1394 aaKnown RBP4.27□□□□□ -1.73
ZNF540-207ENST00000589285 A0A087WZG4 1122 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 AGRPO00253 132 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 NRDCO43847 1150 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 SMARCA5O60264 1052 aaPredicted RBP4.26□□□□□ -1.73
ZNF540-207ENST00000589285 DBHP09172 617 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 AMPHP49418 695 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 SRSF3P84103 164 aaKnown RBP4.26□□□□□ -1.73
ZNF540-207ENST00000589285 GRIN1Q05586 938 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 IFRD2Q12894 506 aaPredicted RBP4.26□□□□□ -1.73
ZNF540-207ENST00000589285 HSP90AB2PQ58FF8 381 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 KRT28Q7Z3Y7 464 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 COG3Q96JB2 828 aa4.26□□□□□ -1.73
ZNF540-207ENST00000589285 ZSWIM3Q96MP5 696 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms