RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 MTERF4Q7Z6M4 381 aaKnown RBP12.49□□□□□ -0.41
LIG3-204ENST00000585740 GPC2Q8N158 579 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 OR8K1Q8NGG5 319 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 CPLX3Q8WVH0 158 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 TBC1D5Q92609 795 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 MAP7D2Q96T17 732 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 RIT2Q99578 217 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 MXRA8Q9BRK3 442 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 TANGO6Q9C0B7 1094 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 ABHD10Q9NUJ1 306 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 KCND2Q9NZV8 630 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.49□□□□□ -0.41
LIG3-204ENST00000585740 CAPN11Q9UMQ6 739 aa12.49□□□□□ -0.41
LIG3-204ENST00000585740 LUC7L2Q9Y383 392 aaKnown RBP12.49□□□□□ -0.41
LIG3-204ENST00000585740 FRMPD4Q14CM0 1322 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 A0A1W2PQJ5 194 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 TMEM88BA6NKF7 163 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 B4DLN1 442 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 CTIFO43310 598 aaKnown RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 FLOT1O75955 427 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 TAL1P17542 331 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 VCAM1P19320 739 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 KRT9P35527 623 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 FXR1P51114 621 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIG3-204ENST00000585740 OAZ1P54368 228 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 BACE1P56817 501 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 MLLT1Q03111 559 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 EDRF1Q3B7T1 1238 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 SUPT20HL1Q3ZLR7 823 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 VWA3BQ502W6 1294 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 ZCWPW2Q504Y3 356 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 NOL9Q5SY16 702 aaKnown RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 NBPF12Q5TAG4 269 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 XRRA1Q6P2D8 792 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 SAMD1Q6SPF0 538 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 CCDC84Q86UT8 332 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 ZNF280CQ8ND82 737 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 ZNF397Q8NF99 534 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 CLEC4DQ8WXI8 215 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 HPS3Q969F9 1004 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 AGBL1Q96MI9 1066 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 ZNF577Q9BSK1 485 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 RPAP3Q9H6T3 665 aaPredicted RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 ZNHIT6Q9NWK9 470 aaKnown RBP12.48□□□□□ -0.41
LIG3-204ENST00000585740 GPRC5DQ9NZD1 345 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 PCDHA2Q9Y5H9 948 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 COL4A3BPQ9Y5P4 624 aa12.48□□□□□ -0.41
LIG3-204ENST00000585740 MYH11P35749 1972 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 CALUO43852 315 aaPredicted RBP12.47□□□□□ -0.41
LIG3-204ENST00000585740 TBCAO75347 108 aaKnown RBP12.47□□□□□ -0.41
LIG3-204ENST00000585740 HSPA8P11142 646 aaKnown RBP12.47□□□□□ -0.41
LIG3-204ENST00000585740 ALAS1P13196 640 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 ZBED6P86452 979 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 MTMR2Q13614 643 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 GIT2Q14161 759 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 TKFCQ3LXA3 575 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 ARSHQ5FYA8 562 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 ANGEL2Q5VTE6 544 aaKnown RBP12.47□□□□□ -0.41
LIG3-204ENST00000585740 PCNX4Q63HM2 1172 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 SYT10Q6XYQ8 523 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 LRRC55Q6ZSA7 311 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 ZC3H3Q8IXZ2 948 aaKnown RBP12.47□□□□□ -0.41
LIG3-204ENST00000585740 CYP2W1Q8TAV3 490 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 PCMTD1Q96MG8 357 aaPredicted RBP12.47□□□□□ -0.41
LIG3-204ENST00000585740 NACC1Q96RE7 527 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 DNAJC7Q99615 494 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 HSD17B14Q9BPX1 270 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 EDEM3Q9BZQ6 932 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 EMILIN3Q9NT22 766 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 ADGRG1Q9Y653 693 aa12.47□□□□□ -0.41
LIG3-204ENST00000585740 UBE4BO95155 1302 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 MYPNQ86TC9 1320 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 IQCA1LA6NCM1 817 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 CCDC85CA6NKD9 419 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 EML1O00423 815 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 TRAF5O00463 557 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 CETN3O15182 167 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 SLU7O95391 586 aaKnown RBP12.46□□□□□ -0.41
LIG3-204ENST00000585740 PTPRAP18433 802 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 TRIM21P19474 475 aaKnown RBP12.46□□□□□ -0.41
LIG3-204ENST00000585740 MARSP56192 900 aaKnown RBP12.46□□□□□ -0.41
LIG3-204ENST00000585740 CDK17Q00537 523 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 PPP2R3AQ06190 1150 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 SPP2Q13103 211 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 PABPC4Q13310 644 aaKnown RBP eCLIP12.46□□□□□ -0.41
LIG3-204ENST00000585740 BMT2Q1RMZ1 405 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 CCDC40Q4G0X9 1142 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 MIIPQ5JXC2 388 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 TRIM65Q6PJ69 517 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 B3GNT9Q6UX72 402 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 RAD9BQ6WBX8 426 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 TOGARAM2Q6ZUX3 1019 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 STXBP4Q6ZWJ1 553 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 DYDC2Q96IM9 177 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 WRNIP1Q96S55 665 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 NDST4Q9H3R1 872 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 L2HGDHQ9H9P8 463 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 RAVER2Q9HCJ3 691 aaKnown RBP12.46□□□□□ -0.41
LIG3-204ENST00000585740 JADE2Q9NQC1 790 aa12.46□□□□□ -0.41
LIG3-204ENST00000585740 TMOD4Q9NZQ9 345 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms