RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	NAV1	Q8NEY1	1877 aa		11.15	□□□□□ -0.63
CIITA-208	ENST00000572665	MYH8	P13535	1937 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665		M0R082	166 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	RLBP1	P12271	317 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	ZKSCAN1	P17029	563 aa	Predicted RBP	11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	CACTIN-AS1	Q8N1I8	211 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	ZNF417	Q8TAU3	575 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	WHAMM	Q8TF30	809 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	ZNF587	Q96SQ5	575 aa	Predicted RBP	11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	RABGAP1	Q9Y3P9	1069 aa		11.14	□□□□□ -0.63
CIITA-208	ENST00000572665	BRCA2	P51587	3418 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	FBXO24	O75426	580 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	CYP2B6	P20813	491 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	AFF1	P51825	1210 aa	Known RBP	11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	SLC9C2	Q5TAH2	1124 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	C8orf86	Q6ZUL3	223 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	VN1R5	Q7Z5H4	357 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	PLEKHH3	Q7Z736	793 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	PAWR	Q96IZ0	340 aa	Known RBP	11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	PAGR1	Q9BTK6	254 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	KIAA1683	Q9H0B3	1180 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	CLEC4M	Q9H2X3	399 aa	Predicted RBP	11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	SWAP70	Q9UH65	585 aa		11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	MKI67	P46013	3256 aa	Known RBP	11.13	□□□□□ -0.63
CIITA-208	ENST00000572665	PLXNB2	O15031	1838 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	LILRB5	O75023	590 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	CDC27	P30260	824 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	FAAP100	Q0VG06	881 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	GPR142	Q7Z601	462 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	PANK1	Q8TE04	598 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	APBA2	Q99767	749 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	NOC4L	Q9BVI4	516 aa	Known RBP	11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	C11orf49	Q9H6J7	331 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	SH2D4A	Q9H788	454 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	IL1RAPL2	Q9NP60	686 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	MCM9	Q9NXL9	1143 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	RBPJL	Q9UBG7	517 aa		11.12	□□□□□ -0.63
CIITA-208	ENST00000572665	MPHOSPH10	O00566	681 aa	Known RBP	11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	MSC	O60682	206 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	PDE6A	P16499	860 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	EPHA1	P21709	976 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	PCDH1	Q08174	1060 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	ZYX	Q15942	572 aa	Known RBP	11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	WDR78	Q5VTH9	848 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	MFSD14C	Q5VZR4	134 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	ZSCAN25	Q6NSZ9	544 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	LBX2	Q6XYB7	198 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	CATSPERG	Q6ZRH7	1159 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	TRIB2	Q92519	343 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	DNAJC2	Q99543	621 aa	Known RBP	11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	RIOK1	Q9BRS2	568 aa	Known RBP	11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	ANTXR1	Q9H6X2	564 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	TXNRD2	Q9NNW7	524 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	PRDM6	Q9NQX0	595 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	ATP8A2	Q9NTI2	1148 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	SLC5A4	Q9NY91	659 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	HOXC10	Q9NYD6	342 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	OGDHL	Q9ULD0	1010 aa		11.11	□□□□□ -0.63
CIITA-208	ENST00000572665	ZNF532	Q9HCE3	1301 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	DDX60L	Q5H9U9	1706 aa	Known RBP	11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	MYH7	P12883	1935 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	SLC15A5	A6NIM6	579 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	GOLIM4	O00461	696 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	VCAM1	P19320	739 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	AMPD1	P23109	780 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	JAG1	P78504	1218 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	CCDC85B	Q15834	202 aa	Predicted RBP	11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	MAP3K21	Q5TCX8	1036 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	ZNF385C	Q66K41	422 aa	Predicted RBP	11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	TMEM179	Q6ZVK1	233 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	SV2B	Q7L1I2	683 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	HS2ST1	Q7LGA3	356 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	NT5DC4	Q86YG4	428 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	IL22RA1	Q8N6P7	574 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	EDC3	Q96F86	508 aa	Known RBP	11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	CEP44	Q9C0F1	390 aa		11.1	□□□□□ -0.63
CIITA-208	ENST00000572665	STRN	O43815	780 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	ERCC5	P28715	1186 aa	Predicted RBP	11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	SHMT1	P34896	483 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	PLCD1	P51178	756 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	COG2	Q14746	738 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	MB21D1	Q8N884	522 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	LPAR1	Q92633	364 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	USP6NL	Q92738	828 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	CCDC17	Q96LX7	622 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	NECAB3	Q96P71	396 aa	Predicted RBP	11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	PORCN	Q9H237	461 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	RPAP3	Q9H6T3	665 aa	Predicted RBP	11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	ZBTB40	Q9NUA8	1239 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	PAG1	Q9NWQ8	432 aa		11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	GPN3	Q9UHW5	284 aa	Predicted RBP	11.09	□□□□□ -0.63
CIITA-208	ENST00000572665	ALPK3	Q96L96	1907 aa		11.08	□□□□□ -0.64
CIITA-208	ENST00000572665		H3BRJ5	948 aa		11.08	□□□□□ -0.64
CIITA-208	ENST00000572665	ENC1	O14682	589 aa		11.08	□□□□□ -0.64
CIITA-208	ENST00000572665	B3GALT4	O96024	378 aa		11.08	□□□□□ -0.64
CIITA-208	ENST00000572665	ESRRA	P11474	423 aa	Predicted RBP	11.08	□□□□□ -0.64
CIITA-208	ENST00000572665	ATP5J	P18859	108 aa		11.08	□□□□□ -0.64
CIITA-208	ENST00000572665	BMP8B	P34820	402 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 26 ms