RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 MNAT1P51948 309 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 RNF187Q5TA31 235 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-207ENST00000572253 KCNK18Q7Z418 384 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 PLCD3Q8N3E9 789 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 NUDT12Q9BQG2 462 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 RTFDC1Q9BY42 306 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-207ENST00000572253 GPCPD1Q9NPB8 672 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 AIPL1Q9NZN9 384 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 PLAAQ9Y263 795 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 MEFVO15553 781 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-207ENST00000572253 NOL4O94818 638 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 PDHBP11177 359 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 DNAJC19Q96DA6 116 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 EMILIN3Q9NT22 766 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 A0A087X0T9 212 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 TMCO5BA8MYB1 307 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 RAD51CO43502 376 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 FAM228BP0C875 321 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 HSPA9P38646 679 aaKnown RBP11.8□□□□□ -0.52
CCDC40-207ENST00000572253 MTMR3Q13615 1198 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 GLIS3Q8NEA6 775 aa11.8□□□□□ -0.52
CCDC40-207ENST00000572253 SRP68Q9UHB9 627 aaKnown RBP11.8□□□□□ -0.52
CCDC40-207ENST00000572253 PACSIN2Q9UNF0 486 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-207ENST00000572253 GPR75-ASB3A0A0A6YYF3 556 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 PNMA6FA0A0J9YX94 578 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 ZSCAN5CA6NGD5 496 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 SLC26A4O43511 780 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 FLOT1O75955 427 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 PLA2G4BP0C869 781 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 MDH1P40925 334 aaKnown RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 MARSP56192 900 aaKnown RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 PTGISQ16647 500 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 ISCUQ9H1K1 167 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 SNED1Q8TER0 1413 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 SRRM3A6NNA2 597 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 BTNL10A8MVZ5 291 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 KCNQ2O43526 872 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 KIF4AO95239 1232 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 GUCY1A3Q02108 690 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 GRAPQ13588 217 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 ODF2Q5BJF6 829 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 GRAPLQ8TC17 118 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 GLT8D2Q9H1C3 349 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 KIAA1024Q9UPX6 916 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 PGRMC1O00264 195 aaKnown RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 HPDP32754 393 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 USP11P51784 963 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 UBE2SQ16763 222 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 EDRF1Q3B7T1 1238 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 NAA35Q5VZE5 725 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 NLRP14Q86W24 1093 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 LRRC47Q8N1G4 583 aaKnown RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 CEP89Q96ST8 783 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 PLCB1Q9NQ66 1216 aa11.79□□□□□ -0.52
CCDC40-207ENST00000572253 ARMCX3Q9UH62 379 aaPredicted RBP11.79□□□□□ -0.52
CCDC40-207ENST00000572253 E7EVH7 732 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 RPS6KA4O75676 772 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 ANXA13P27216 316 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 IRX3P78415 501 aaPredicted RBP11.78□□□□□ -0.52
CCDC40-207ENST00000572253 KCNH2Q12809 1159 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 EMC10Q5UCC4 262 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 CCDC26Q8TAB7 109 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 ZNF473Q8WTR7 871 aaKnown RBP11.78□□□□□ -0.52
CCDC40-207ENST00000572253 CALR3Q96L12 384 aaKnown RBP11.78□□□□□ -0.52
CCDC40-207ENST00000572253 YY1AP1Q9H869 796 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 CCDC188H7C350 402 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 CCDC91Q7Z6B0 441 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 CABS1Q96KC9 395 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 HDAC9Q9UKV0 1011 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 GNPATO15228 680 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 NR2F2P24468 414 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 HNRNPH1P31943 449 aaKnown RBP11.78□□□□□ -0.52
CCDC40-207ENST00000572253 CTNNA1P35221 906 aaKnown RBP11.78□□□□□ -0.52
CCDC40-207ENST00000572253 BIRC3Q13489 604 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 GRIK5Q16478 980 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 PEX26Q7Z412 305 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 SYCE1Q8N0S2 351 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 PSTPIP2Q9H939 334 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 TMBIM4Q9HC24 238 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 MTMR4Q9NYA4 1195 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 NAV1Q8NEY1 1877 aa11.78□□□□□ -0.52
CCDC40-207ENST00000572253 E9PMD0 336 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 AFPP02771 609 aaKnown RBP11.77□□□□□ -0.52
CCDC40-207ENST00000572253 EXOC3L4Q17RC7 722 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 YTHDF3Q7Z739 585 aaKnown RBP11.77□□□□□ -0.52
CCDC40-207ENST00000572253 ERMNQ8TAM6 284 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 ACTRT1Q8TDG2 376 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 CCT8L2Q96SF2 557 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 PACSIN1Q9BY11 444 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 GANQ9H2C0 597 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 IRS2Q9Y4H2 1338 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 CALUO43852 315 aaPredicted RBP11.77□□□□□ -0.52
CCDC40-207ENST00000572253 HYIQ5T013 277 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 FBXW10Q5XX13 1052 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 CCDC121Q6ZUS5 278 aa11.77□□□□□ -0.52
CCDC40-207ENST00000572253 BCCIPQ9P287 314 aaKnown RBP eCLIP11.77□□□□□ -0.52
CCDC40-207ENST00000572253 RTCBQ9Y3I0 505 aaKnown RBP11.77□□□□□ -0.52
CCDC40-207ENST00000572253 GOLGA6L7A0A1B0GV03 622 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 KRIT1O00522 736 aa11.77□□□□□ -0.53
CCDC40-207ENST00000572253 UFL1O94874 794 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms