RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 RCCD1A6NED2 376 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 LRRC53A6NM62 1247 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 TBCAO75347 108 aaKnown RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 FLOT1O75955 427 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 IPO7O95373 1038 aaKnown RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 RHOXF2BP0C7M4 288 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 HERVK_113P62684 666 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 SPIRE1Q08AE8 756 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 LRRC55Q6ZSA7 311 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 DNAAF5Q86Y56 855 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 MICALL2Q8IY33 904 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 ZNF397Q8NF99 534 aaPredicted RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 SCFD1Q8WVM8 642 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 CCDC51Q96ER9 411 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 RHOXF2Q9BQY4 288 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 LSM14BQ9BX40 385 aaKnown RBP10.99□□□□□ -0.65
VPS53-206ENST00000570359 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS53-206ENST00000570359 MRFAP1Q9Y605 127 aa10.99□□□□□ -0.65
VPS53-206ENST00000570359 C10orf71Q711Q0 1435 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 CTAGE9A4FU28 777 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 MYCLP12524 364 aaPredicted RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 EIF2AK2P19525 551 aaKnown RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 NR2F2P24468 414 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 SLC12A3P55017 1021 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 ADAM9Q13443 819 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 MTMR2Q13614 643 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 PTPROQ16827 1216 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 ZC2HC1CQ53FD0 456 aaPredicted RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 IL31RAQ8NI17 732 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 JAKMIP2Q96AA8 810 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 CCDC42Q96M95 316 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 ZNF577Q9BSK1 485 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 LACRTQ9GZZ8 138 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 GLT8D2Q9H1C3 349 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 ST7Q9NRC1 585 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 RABGAP1Q9Y3P9 1069 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 TMEM150BA6NC51 233 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 TADA3O75528 432 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 NMT1P30419 496 aaKnown RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 ARHGAP25P42331 645 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 GMPSP49915 693 aaPredicted RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 NAP1L1P55209 391 aaKnown RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 MAN2A1Q16706 1144 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 GRIPAP1Q4V328 841 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 NSMFQ6X4W1 530 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 CHURC1Q8WUH1 139 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 ZKSCAN4Q969J2 545 aaPredicted RBP10.98□□□□□ -0.65
VPS53-206ENST00000570359 LRRC27Q9C0I9 530 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 COL4A3BPQ9Y5P4 624 aa10.98□□□□□ -0.65
VPS53-206ENST00000570359 ACTN1P12814 892 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 CLCN6P51797 869 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 POLR2FP61218 127 aaKnown RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 GIT2Q14161 759 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 NBPF12Q5TAG4 269 aaPredicted RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 MYCT1Q8N699 235 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 NEK11Q8NG66 645 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 NAP1L4Q99733 375 aaKnown RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 PCDHB13Q9Y5F0 798 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.97□□□□□ -0.65
VPS53-206ENST00000570359 ZNF646O15015 1829 aaPredicted RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 A0A1W2PQC6 194 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 AKR1B10O60218 316 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 FOSP01100 380 aaPredicted RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 EIF4A3P38919 411 aaKnown RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 MAP3K9P80192 1104 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 FKBP3Q00688 224 aaKnown RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 RAPGEF1Q13905 1077 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 MUM1L1Q5H9M0 696 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 RDH13Q8NBN7 331 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 WNK4Q96J92 1243 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 DNAJC7Q99615 494 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.97□□□□□ -0.65
VPS53-206ENST00000570359 WDR11Q9BZH6 1224 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 COL20A1Q9P218 1284 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 WRAP73Q9P2S5 460 aaPredicted RBP10.97□□□□□ -0.65
VPS53-206ENST00000570359 VAV3Q9UKW4 847 aa10.97□□□□□ -0.65
VPS53-206ENST00000570359 NFKBIEO00221 500 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 FAM13AO94988 1023 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 ASNSP08243 561 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 MRPS25P82663 173 aaKnown RBP10.96□□□□□ -0.65
VPS53-206ENST00000570359 ZBED6P86452 979 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 LRRC63Q05C16 580 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 PDE4CQ08493 712 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 SPP2Q13103 211 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 COG2Q14746 738 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 NAPGQ99747 312 aaPredicted RBP10.96□□□□□ -0.65
VPS53-206ENST00000570359 MLXIPQ9HAP2 919 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 ZNF446Q9NWS9 450 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 HACL1Q9UJ83 578 aa10.96□□□□□ -0.65
VPS53-206ENST00000570359 IGLV3-22A0A075B6J6 115 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 PEX10O60683 326 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 NPM3O75607 178 aaKnown RBP10.96□□□□□ -0.66
VPS53-206ENST00000570359 FGFR1OPO95684 399 aaKnown RBP10.96□□□□□ -0.66
VPS53-206ENST00000570359 ATP1A1P05023 1023 aaKnown RBP10.96□□□□□ -0.66
VPS53-206ENST00000570359 PNMA6AP0CW24 399 aaPredicted RBP10.96□□□□□ -0.66
VPS53-206ENST00000570359 RPA1P27694 616 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 CYLC1P35663 651 aaPredicted RBP10.96□□□□□ -0.66
VPS53-206ENST00000570359 CASP4P49662 377 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 CHMP4BP1P59074 171 aa10.96□□□□□ -0.66
VPS53-206ENST00000570359 GFPT1Q06210 699 aaPredicted RBP10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms