RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 PROCP04070 461 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 A1BGP04217 495 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 CYP7A1P22680 504 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 GBP1P32455 592 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 GMPSP49915 693 aaPredicted RBP7.12□□□□□ -1.27
VPS39-209ENST00000568029 RNF4P78317 190 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 ST5P78524 1137 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 NOGQ13253 232 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 CDK5R2Q13319 367 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 ZYXQ15942 572 aaKnown RBP7.12□□□□□ -1.27
VPS39-209ENST00000568029 PPP2R5EQ16537 467 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 HSP90AB4PQ58FF6 505 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 C22orf34Q6ZV56 151 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 USP50Q70EL3 339 aaPredicted RBP7.12□□□□□ -1.27
VPS39-209ENST00000568029 HHIPL1Q96JK4 782 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 MIPEPQ99797 713 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 ASPNQ9BXN1 380 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 LRRCC1Q9C099 1032 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 USP44Q9H0E7 712 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 CCDC113Q9H0I3 377 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 CHPF2Q9P2E5 772 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 DUOX1Q9NRD9 1551 aa7.12□□□□□ -1.27
VPS39-209ENST00000568029 VCANP13611 3396 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 HMX2A2RU54 273 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 PRAMEF22A3QJZ6 481 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 PI4KAP2A4QPH2 592 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 IGF2BP3O00425 579 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS39-209ENST00000568029 NPHP1O15259 732 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 CLEC3AO75596 197 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 EOMESO95936 686 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 NPR1P16066 1061 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 POLR2BP30876 1174 aaKnown RBP7.11□□□□□ -1.27
VPS39-209ENST00000568029 AOC3Q16853 763 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 CYP27C1Q4G0S4 372 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 BEND3Q5T5X7 828 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 GPAT2Q6NUI2 795 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 KSR2Q6VAB6 950 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 FAM214BQ7L5A3 538 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 HSCBQ8IWL3 235 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 TMEM192Q8IY95 271 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 TTC5Q8N0Z6 440 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 TOP6BLQ8N6T0 577 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 PI4KAP1Q8N8J0 262 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 BAHD1Q8TBE0 780 aaPredicted RBP7.11□□□□□ -1.27
VPS39-209ENST00000568029 RNF141Q8WVD5 230 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 VWCEQ96DN2 955 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 FBXL18Q96ME1 805 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 DBNDD2Q9BQY9 259 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 SAGE1Q9NXZ1 904 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 C9orf78Q9NZ63 289 aaPredicted RBP7.11□□□□□ -1.27
VPS39-209ENST00000568029 MAPK8IP1Q9UQF2 711 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 LRRFIP2Q9Y608 721 aaKnown RBP7.11□□□□□ -1.27
VPS39-209ENST00000568029 COL4A1P02462 1669 aa7.11□□□□□ -1.27
VPS39-209ENST00000568029 LAMB2P55268 1798 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 HEG1Q9ULI3 1381 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 ASTN2O75129 1339 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 KLRG2A4D1S0 409 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 MSTNO14793 375 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 SMARCA5O60264 1052 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 REC8O95072 547 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 TBC1D8O95759 1140 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 ZNF143P52747 638 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 PDE1AP54750 535 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 NFIAQ12857 509 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 CCDC144BQ3MJ40 725 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 NKAPLQ5M9Q1 402 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 RGMBQ6NW40 437 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 ZNF790Q6PG37 636 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 NOP9Q86U38 636 aaKnown RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 NBPF5PQ86XG9 351 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 SSH3Q8TE77 659 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 JDP2Q8WYK2 163 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 SNX21Q969T3 373 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 ZNF669Q96BR6 464 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 ZNF496Q96IT1 587 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 KREMEN1Q96MU8 473 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 SLC6A18Q96N87 628 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 SPOCK3Q9BQ16 436 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 METTL22Q9BUU2 404 aaPredicted RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 R3HDMLQ9H3Y0 253 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 ADARB2Q9NS39 739 aaKnown RBP7.1□□□□□ -1.27
VPS39-209ENST00000568029 GTF2IRD1Q9UHL9 959 aa7.1□□□□□ -1.27
VPS39-209ENST00000568029 POLR2AP24928 1970 aaKnown RBP7.09□□□□□ -1.27
VPS39-209ENST00000568029 TAF1P21675 1872 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 AOX1Q06278 1338 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 SNRPA1P09661 255 aaKnown RBP7.09□□□□□ -1.27
VPS39-209ENST00000568029 FAM87AP0C7U9 286 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 GSPT1P15170 499 aaKnown RBP7.09□□□□□ -1.27
VPS39-209ENST00000568029 SDSP20132 328 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 ADMP35318 185 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 KIR3DL1P43629 444 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 SLC7A5Q01650 507 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 CXCL9Q07325 125 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 NEXNQ0ZGT2 675 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 ANKRD39Q53RE8 183 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 LARP1BQ659C4 914 aaKnown RBP7.09□□□□□ -1.27
VPS39-209ENST00000568029 PPP1R42Q7Z4L9 355 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 RASAL3Q86YV0 1011 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 FAM178BQ8IXR5 827 aa7.09□□□□□ -1.27
VPS39-209ENST00000568029 RTKN2Q8IZC4 609 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms