RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 RANBP17Q9H2T7 1088 aaKnown RBP13.06□□□□□ -0.32
CLN3-226ENST00000567160 TSHZ2Q9NRE2 1034 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 HDAC6Q9UBN7 1215 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 BRPF3Q9ULD4 1205 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 PLXNA3P51805 1871 aa13.06□□□□□ -0.32
CLN3-226ENST00000567160 CD2BP2O95400 341 aaKnown RBP13.05□□□□□ -0.32
CLN3-226ENST00000567160 CTNNB1P35222 781 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 NDUFV1P49821 464 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 DLX2Q07687 328 aaPredicted RBP13.05□□□□□ -0.32
CLN3-226ENST00000567160 MKRN4PQ13434 485 aaPredicted RBP13.05□□□□□ -0.32
CLN3-226ENST00000567160 MBTPS1Q14703 1052 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 ANKRD1Q15327 319 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 TRAF7Q6Q0C0 670 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 RASGRP2Q7LDG7 609 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 ZNF654Q8IZM8 581 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 TMTC2Q8N394 836 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 SEPT8Q92599 483 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 KAT2BQ92831 832 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 AGXT2Q9BYV1 514 aa13.05□□□□□ -0.32
CLN3-226ENST00000567160 GOLGA8BA8MQT2 603 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 RSPH10B2B2RC85 870 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 C5orf67F2Z3F1 127 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 TBX10O75333 385 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 UPP2O95045 317 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 RSPH10BP0C881 870 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 RXRAP19793 462 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 AVPR2P30518 371 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 ID4P47928 161 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 PSEN2P49810 448 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 CCDC96Q2M329 555 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 TRIM71Q2Q1W2 868 aaKnown RBP13.04□□□□□ -0.32
CLN3-226ENST00000567160 PLEKHG4Q58EX7 1191 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 APOA5Q6Q788 366 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 SYNE3Q6ZMZ3 975 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 CATIPQ7Z7H3 387 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 SGMS1Q86VZ5 419 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 MICU3Q86XE3 530 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 DHX37Q8IY37 1157 aaKnown RBP13.04□□□□□ -0.32
CLN3-226ENST00000567160 FBXL16Q8N461 479 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 FIBCD1Q8N539 461 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 DCAF4Q8WV16 495 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 ALG1Q9BT22 464 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 IFIH1Q9BYX4 1025 aaKnown RBP13.04□□□□□ -0.32
CLN3-226ENST00000567160 IGFLR1Q9H665 355 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 TPCN1Q9ULQ1 816 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 SLC12A7Q9Y666 1083 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 MYO15AQ9UKN7 3530 aa13.04□□□□□ -0.32
CLN3-226ENST00000567160 KIAA1217Q5T5P2 1943 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 LOC730098B7Z3J9 87 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 H0Y858 1186 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 ZBTB43O43298 467 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 ARIH2O95376 493 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 LARGE1O95461 756 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 EYA4O95677 639 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 THPOP40225 353 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 VCPP55072 806 aaKnown RBP13.03□□□□□ -0.32
CLN3-226ENST00000567160 RPS6P62753 249 aaKnown RBP13.03□□□□□ -0.32
CLN3-226ENST00000567160 ARHGAP1Q07960 439 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 STK3Q13188 491 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 MFSD10Q14728 455 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 KIAA0753Q2KHM9 967 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 CCDC62Q6P9F0 684 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 ALG13Q9NP73 1137 aaKnown RBP13.03□□□□□ -0.32
CLN3-226ENST00000567160 TLR9Q9NR96 1032 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 LIMCH1Q9UPQ0 1083 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 TRPC6Q9Y210 931 aa13.03□□□□□ -0.32
CLN3-226ENST00000567160 PRR23AA6NEV1 266 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 DDAH1O94760 285 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 F2P00734 622 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 BMPR1AP36894 532 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 CCT2P78371 535 aaKnown RBP13.02□□□□□ -0.33
CLN3-226ENST00000567160 TROAPQ12815 778 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 ADAM15Q13444 863 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 CBX2Q14781 532 aaPredicted RBP13.02□□□□□ -0.33
CLN3-226ENST00000567160 LY6KQ17RY6 165 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 SYDE2Q5VT97 1194 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 ASCL5Q7RTU5 278 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 CLEC4DQ8WXI8 215 aa13.02□□□□□ -0.33
CLN3-226ENST00000567160 FRMPD2Q68DX3 1309 aaPredicted RBP13.02□□□□□ -0.33
CLN3-226ENST00000567160 CACNA1BQ00975 2339 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 GOLGA8AA7E2F4 631 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 GRM6O15303 877 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 MMP1P03956 469 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 GOLGA8HP0CJ92 632 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 PDHBP11177 359 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 PDIA3P30101 505 aaKnown RBP13.01□□□□□ -0.33
CLN3-226ENST00000567160 METAP2P50579 478 aaKnown RBP eCLIP13.01□□□□□ -0.33
CLN3-226ENST00000567160 EVCP57679 992 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 ME3Q16798 604 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 BTNL9Q6UXG8 535 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 SEPT14Q6ZU15 432 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 SERINC5Q86VE9 423 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 NECAB1Q8N987 351 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 SMRP1Q8NCR6 262 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 PPTC7Q8NI37 304 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 CTCFLQ8NI51 663 aaPredicted RBP13.01□□□□□ -0.33
CLN3-226ENST00000567160 APBB2Q92870 758 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 WNT8BQ93098 351 aa13.01□□□□□ -0.33
CLN3-226ENST00000567160 EMID1Q96A84 441 aaPredicted RBP13.01□□□□□ -0.33
CLN3-226ENST00000567160 ASIC4Q96FT7 647 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms