RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SEPT1Q8WYJ6 367 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 CDHR1Q96JP9 859 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 JAKMIP1Q96N16 626 aaKnown RBP11.71□□□□□ -0.53
LDLR-214ENST00000560628 RIC8AQ9NPQ8 531 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 TMEM260Q9NX78 707 aa11.71□□□□□ -0.53
LDLR-214ENST00000560628 CDH23Q9H251 3354 aa11.71□□□□□ -0.54
LDLR-214ENST00000560628 STXBP3O00186 592 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 HMGB1P09429 215 aaKnown RBP11.7□□□□□ -0.54
LDLR-214ENST00000560628 ARP10275 920 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 ADCY7P51828 1080 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 SKIV2LQ15477 1246 aaKnown RBP11.7□□□□□ -0.54
LDLR-214ENST00000560628 GLG1Q92896 1179 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 KCNB2Q92953 911 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 RAD9AQ99638 391 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 MXRA8Q9BRK3 442 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 EHMT1Q9H9B1 1298 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 SNX14Q9Y5W7 946 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 MTCH2Q9Y6C9 303 aa11.7□□□□□ -0.54
LDLR-214ENST00000560628 EYSQ5T1H1 3165 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 EMSYQ7Z589 1322 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 MAFGO15525 162 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 GTPBP6O43824 516 aaPredicted RBP11.69□□□□□ -0.54
LDLR-214ENST00000560628 EFCAB14O75071 495 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 PPFIA3O75145 1194 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 GJB5O95377 273 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 HSPA4P34932 840 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 METAP2P50579 478 aaKnown RBP eCLIP11.69□□□□□ -0.543e-7■□□□□ 8.4
LDLR-214ENST00000560628 IGBP1P78318 339 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 ADAM17P78536 824 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 PLEKHG4Q58EX7 1191 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 TJAP1Q5JTD0 557 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 JAKMIP3Q5VZ66 844 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 BLOC1S2Q6QNY1 142 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 RUFY4Q6ZNE9 571 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 MYOCDQ8IZQ8 938 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 SEPT8Q92599 483 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 SYMPKQ92797 1274 aaKnown RBP11.69□□□□□ -0.54
LDLR-214ENST00000560628 BRF1Q92994 677 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 ZBTB10Q96DT7 871 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 UIMC1Q96RL1 719 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 SMARCAD1Q9H4L7 1026 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 KCNH7Q9NS40 1196 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 BARHL2Q9NY43 387 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 THEGQ9P2T0 379 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 MTUS1Q9ULD2 1270 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 DOCK5Q9H7D0 1870 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 PRUNE2Q8WUY3 3088 aa11.69□□□□□ -0.54
LDLR-214ENST00000560628 TANC1Q9C0D5 1861 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 NRCAMQ92823 1304 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 ADAMTS3O15072 1205 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 UPP2O95045 317 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 FOSP01100 380 aaPredicted RBP11.68□□□□□ -0.54
LDLR-214ENST00000560628 CHRNA1P02708 482 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 AMHP03971 560 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 ZNF76P36508 570 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 MRPS5P82675 430 aaKnown RBP11.68□□□□□ -0.54
LDLR-214ENST00000560628 PPFIA1Q13136 1202 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 GRB10Q13322 594 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 GRIK4Q16099 956 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 ATXN2LQ8WWM7 1075 aaKnown RBP11.68□□□□□ -0.54
LDLR-214ENST00000560628 ASB2Q96Q27 587 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 PCYT2Q99447 389 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 ANO3Q9BYT9 981 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 JPH1Q9HDC5 661 aaPredicted RBP11.68□□□□□ -0.54
LDLR-214ENST00000560628 ERAP1Q9NZ08 941 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 SLC9A2Q9UBY0 812 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 UNC80Q8N2C7 3258 aa11.68□□□□□ -0.54
LDLR-214ENST00000560628 CCDC196A0A1B0GTZ2 297 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 LINC01553A4QN01 128 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 DDX39AO00148 427 aaKnown RBP11.67□□□□□ -0.54
LDLR-214ENST00000560628 MEIS1O00470 390 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 CAND2O75155 1236 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 SCG2P13521 617 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 POU3F3P20264 500 aaPredicted RBP11.67□□□□□ -0.54
LDLR-214ENST00000560628 RPS6KB1P23443 525 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 ACTR2P61160 394 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 TFF2Q03403 129 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 PFKFB3Q16875 520 aaPredicted RBP11.67□□□□□ -0.54
LDLR-214ENST00000560628 CEP55Q53EZ4 464 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 FAM26DQ5JW98 314 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 PPP1R18Q6NYC8 613 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 GDPD5Q8WTR4 605 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 DNAJB3Q8WWF6 145 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 TGS1Q96RS0 853 aaKnown RBP11.67□□□□□ -0.54
LDLR-214ENST00000560628 SDF4Q9BRK5 362 aa11.67□□□□□ -0.54
LDLR-214ENST00000560628 TSPYL2Q9H2G4 693 aaPredicted RBP11.67□□□□□ -0.54
LDLR-214ENST00000560628 AGO4Q9HCK5 861 aaKnown RBP11.67□□□□□ -0.54
LDLR-214ENST00000560628 CHD9Q3L8U1 2897 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 hCG_1984214I3L0E3 225 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 LPXNO60711 386 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 REC8O95072 547 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 GHRP10912 638 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 INSRRP14616 1297 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 SREBF1P36956 1147 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 CLK2P49760 499 aaKnown RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 RCAN1P53805 252 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 ERVK-21P61565 698 aa11.66□□□□□ -0.54
LDLR-214ENST00000560628 CCT2P78371 535 aaKnown RBP11.66□□□□□ -0.54
LDLR-214ENST00000560628 ITGB3BPQ13352 177 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms