RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 MRPS35P82673 323 aaKnown RBP18.89■□□□□ 0.62
SYNE3-204ENST00000555759 NFRKBQ6P4R8 1299 aa18.89■□□□□ 0.62
SYNE3-204ENST00000555759 PROM2Q8N271 834 aa18.89■□□□□ 0.62
SYNE3-204ENST00000555759 TRIM56Q9BRZ2 755 aaKnown RBP18.89■□□□□ 0.62
SYNE3-204ENST00000555759 CPP00450 1065 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 FOSP01100 380 aaPredicted RBP18.89■□□□□ 0.61
SYNE3-204ENST00000555759 HNRNPCP07910 306 aaKnown RBP eCLIP18.89■□□□□ 0.61
SYNE3-204ENST00000555759 H2AFXP16104 143 aaPredicted RBP18.89■□□□□ 0.61
SYNE3-204ENST00000555759 C1orf146Q5VVC0 180 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 C16orf87Q6PH81 154 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 HDAC6Q9UBN7 1215 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 DDX39AO00148 427 aaKnown RBP18.89■□□□□ 0.61
SYNE3-204ENST00000555759 TTBK2Q6IQ55 1244 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 IL17RAQ96F46 866 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 LRRC24Q50LG9 513 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 FAM47EQ6ZV65 393 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 ATG3Q9NT62 314 aa18.89■□□□□ 0.61
SYNE3-204ENST00000555759 PRDM15P57071 1507 aaPredicted RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 AGGF1Q8N302 714 aaeCLIP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 C3orf20Q8ND61 904 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 EMILIN3Q9NT22 766 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PAIP2BQ9ULR5 123 aaKnown RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 SNX12Q9UMY4 172 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 RPAP1Q9BWH6 1393 aaPredicted RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 MCF2P10911 925 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PYGBP11216 843 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 ADD2P35612 726 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 INPP1P49441 399 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 LRRC41Q15345 812 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 MAPKAPK5Q8IW41 473 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PDIK1LQ8N165 341 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 TGFBRAP1Q8WUH2 860 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 MLXIPQ9HAP2 919 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PPARGC1AQ9UBK2 798 aaKnown RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 DIAPH2O60879 1101 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PCCAP05165 728 aaPredicted RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 CHRNA3P32297 505 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 SDR42E1Q8WUS8 393 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 MCF2LO15068 1137 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 TOM1L1O75674 476 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PLCG1P19174 1290 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 NT5C2P49902 561 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 KPNA2P52292 529 aaKnown RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 PYROXD1Q8WU10 500 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 HOOK2Q96ED9 719 aa18.88■□□□□ 0.61
SYNE3-204ENST00000555759 MRPL40Q9NQ50 206 aaKnown RBP18.88■□□□□ 0.61
SYNE3-204ENST00000555759 CFBP00751 764 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 BRAFP15056 766 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 EEF1B2P24534 225 aaKnown RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 PLA2G4AP47712 749 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 AGBL2Q5U5Z8 902 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 EDEM3Q9BZQ6 932 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 TRIM15Q9C019 465 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 NOC2LQ9Y3T9 749 aaKnown RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 ITIH6Q6UXX5 1313 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 WDR91A4D1P6 747 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 AGTP01019 485 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 LSP1P33241 339 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 PPP2R5CQ13362 524 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 FSCBQ5H9T9 825 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 TEDDM1Q5T9Z0 273 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 RFX6Q8HWS3 928 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 CCDC124Q96CT7 223 aaKnown RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 ZNF219Q9P2Y4 722 aaPredicted RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 KRT37O76014 449 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 KRT19P08727 400 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 USH1GQ495M9 461 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 KIFC3Q9BVG8 833 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 MOV10L1Q9BXT6 1211 aaKnown RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 TTC26A0AVF1 554 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 SPATA21Q7Z572 469 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 FBXL5Q9UKA1 691 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 CAPN11Q9UMQ6 739 aa18.87■□□□□ 0.61
SYNE3-204ENST00000555759 HSPA9P38646 679 aaKnown RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 ZC3H15Q8WU90 426 aaKnown RBP18.87■□□□□ 0.61
SYNE3-204ENST00000555759 LRRC53A6NM62 1247 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 TEX33O43247 280 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 LIG4P49917 911 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ODR4Q5SWX8 454 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 SCYL2Q6P3W7 929 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 TBC1D22AQ8WUA7 517 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 GDAQ9Y2T3 454 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ESYT3A0FGR9 886 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 FAM170AA1A519 330 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ENO4A6NNW6 628 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 FAM107AO95990 144 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 KRT1P04264 644 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ECE1P42892 770 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ZBTB38Q8NAP3 1195 aaPredicted RBP18.86■□□□□ 0.61
SYNE3-204ENST00000555759 SLC40A1Q9NP59 571 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 NCF2P19878 526 aaPredicted RBP18.86■□□□□ 0.61
SYNE3-204ENST00000555759 DHX34Q14147 1143 aaKnown RBP18.86■□□□□ 0.61
SYNE3-204ENST00000555759 MXD3Q9BW11 206 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 PRDM4Q9UKN5 801 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ZNF608Q9ULD9 1512 aaPredicted RBP18.86■□□□□ 0.61
SYNE3-204ENST00000555759 A0A1B0GTH6 734 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 KRT26Q7Z3Y9 468 aa18.86■□□□□ 0.61
SYNE3-204ENST00000555759 SRRM1Q8IYB3 904 aaKnown RBP18.86■□□□□ 0.61
SYNE3-204ENST00000555759 ICA1LQ8NDH6 482 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms