RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 REXO1L1PQ8IX06 675 aa4.12□□□□□ -1.75
SRP54-204ENST00000553923 TMEM145Q8NBT3 493 aa4.12□□□□□ -1.75
SRP54-204ENST00000553923 PIP4K2CQ8TBX8 421 aa4.12□□□□□ -1.75
SRP54-204ENST00000553923 PPP1R14AQ96A00 147 aa4.12□□□□□ -1.75
SRP54-204ENST00000553923 SEC16BQ96JE7 1060 aa4.12□□□□□ -1.75
SRP54-204ENST00000553923 TRIM8Q9BZR9 551 aa4.12□□□□□ -1.75
SRP54-204ENST00000553923 PCSK5Q92824 1860 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 RAD17O75943 681 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 FAHP16930 419 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 GRIN1Q05586 938 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 SKIDA1Q1XH10 827 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 LSM12Q3MHD2 195 aaKnown RBP4.11□□□□□ -1.75
SRP54-204ENST00000553923 FNDC7Q5VTL7 733 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 TRIM48Q8IWZ4 208 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 RBM12BQ8IXT5 1001 aaKnown RBP4.11□□□□□ -1.75
SRP54-204ENST00000553923 STPG3Q8N7X2 389 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 GIMAP8Q8ND71 665 aaPredicted RBP4.11□□□□□ -1.75
SRP54-204ENST00000553923 IL17DQ8TAD2 202 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 CACTINQ8WUQ7 758 aaKnown RBP4.11□□□□□ -1.75
SRP54-204ENST00000553923 CHAMP1Q96JM3 812 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 JAM3Q9BX67 310 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 ZFP69BQ9UJL9 534 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 TELO2Q9Y4R8 837 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 SLC30A1Q9Y6M5 507 aa4.11□□□□□ -1.75
SRP54-204ENST00000553923 MATN2O00339 956 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 SCAMP3O14828 347 aaKnown RBP4.1□□□□□ -1.75
SRP54-204ENST00000553923 MAFKO60675 156 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 MSCO60682 206 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 LTFP02788 710 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 C1SP09871 688 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 MCM7P33993 719 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 PFKPQ01813 784 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 PAN2Q504Q3 1202 aaKnown RBP4.1□□□□□ -1.75
SRP54-204ENST00000553923 HABP4Q5JVS0 413 aaKnown RBP4.1□□□□□ -1.75
SRP54-204ENST00000553923 OTOP3Q7RTS5 596 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 LDLRAD3Q86YD5 345 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 CPLX3Q8WVH0 158 aa4.1□□□□□ -1.75
SRP54-204ENST00000553923 PPARGC1AQ9UBK2 798 aaKnown RBP4.1□□□□□ -1.75
SRP54-204ENST00000553923 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.1□□□□□ -1.75
SRP54-204ENST00000553923 KRIT1O00522 736 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 U2SURPO15042 1029 aaKnown RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 SUSD5O60279 629 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 ENO2P09104 434 aaPredicted RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 ACO1P21399 889 aaKnown RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 VAMP1P23763 118 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 GLRBP48167 497 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 NANOS3P60323 173 aaKnown RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 HNRNPA0Q13151 305 aaKnown RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 USP10Q14694 798 aaKnown RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 RNF151Q2KHN1 245 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 SV2CQ496J9 727 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 CD276Q5ZPR3 534 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 PCSK4Q6UW60 755 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 C6orf15Q6UXA7 325 aaPredicted RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 FAM178BQ8IXR5 827 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 UHMK1Q8TAS1 419 aaKnown RBP4.09□□□□□ -1.75
SRP54-204ENST00000553923 CSRNP2Q9H175 543 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 ARHGAP20Q9P2F6 1191 aa4.09□□□□□ -1.75
SRP54-204ENST00000553923 ZNF839A8K0R7 811 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 B2RBV5 119 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 H0Y858 1186 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 ACOT7O00154 380 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 FBXO21O94952 628 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 GRIA2P42262 883 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 KCNJ6P48051 423 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 EPHA5P54756 1037 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 INHBCP55103 352 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 TUSC3Q13454 348 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 TOP3AQ13472 1001 aaPredicted RBP4.08□□□□□ -1.76
SRP54-204ENST00000553923 MRM1Q6IN84 353 aaKnown RBP4.08□□□□□ -1.76
SRP54-204ENST00000553923 POLNQ7Z5Q5 900 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 C1orf210Q8IVY1 113 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 HOMEZQ8IX15 550 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 IFNL2Q8IZJ0 200 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 CARD11Q9BXL7 1154 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 GPR27Q9NS67 375 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 STRIP2Q9ULQ0 834 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 OAZ3Q9UMX2 235 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 TNFRSF18Q9Y5U5 241 aa4.08□□□□□ -1.76
SRP54-204ENST00000553923 A0A087X1B8 175 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 CR2P20023 1033 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 ACRV1P26436 265 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 POLD1P28340 1107 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 RAC3P60763 192 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 MAP4K2Q12851 820 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 NOLC1Q14978 699 aaKnown RBP eCLIP4.07□□□□□ -1.76
SRP54-204ENST00000553923 MICAL1Q8TDZ2 1067 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 NEU4Q8WWR8 484 aaPredicted RBP4.07□□□□□ -1.76
SRP54-204ENST00000553923 ANAPC16Q96DE5 110 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 ZNF703Q9H7S9 590 aaPredicted RBP4.07□□□□□ -1.76
SRP54-204ENST00000553923 LRP2BPQ9P2M1 347 aa4.07□□□□□ -1.76
SRP54-204ENST00000553923 NKRFO15226 690 aaKnown RBP eCLIP4.06□□□□□ -1.76
SRP54-204ENST00000553923 CUTAO60888 179 aa4.06□□□□□ -1.76
SRP54-204ENST00000553923 COL6A2P12110 1019 aa4.06□□□□□ -1.76
SRP54-204ENST00000553923 HDLBPQ00341 1268 aaKnown RBP4.06□□□□□ -1.76
SRP54-204ENST00000553923 NFYCQ13952 458 aa4.06□□□□□ -1.76
SRP54-204ENST00000553923 TBR1Q16650 682 aa4.06□□□□□ -1.76
SRP54-204ENST00000553923 RSPO2Q6UXX9 243 aaPredicted RBP4.06□□□□□ -1.76
SRP54-204ENST00000553923 Q6ZPA2 131 aa4.06□□□□□ -1.76
SRP54-204ENST00000553923 NT5DC4Q86YG4 428 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms