RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NPHP3-ACAD11A0A0J9YXS1 232 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 IPO5O00410 1097 aaKnown RBP29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 SLITRK3O94933 977 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 GYPCP04921 128 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 ITGB5P18084 799 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 CYP4A11Q02928 519 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 COG2Q14746 738 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 HERC4Q5GLZ8 1057 aaPredicted RBP29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 SH3D19Q5HYK7 790 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 HOMER2Q9NSB8 354 aa29.25■■■□□ 2.27
CCDC88C-205ENST00000553403 GLTPD2A6NH11 291 aa29.24■■■□□ 2.27
CCDC88C-205ENST00000553403 RPS6P62753 249 aaKnown RBP29.24■■■□□ 2.27
CCDC88C-205ENST00000553403 CATSPERGQ6ZRH7 1159 aa29.24■■■□□ 2.27
CCDC88C-205ENST00000553403 NEK9Q8TD19 979 aa29.24■■■□□ 2.27
CCDC88C-205ENST00000553403 DYDC2Q96IM9 177 aa29.24■■■□□ 2.27
CCDC88C-205ENST00000553403 UNC45AQ9H3U1 944 aa29.24■■■□□ 2.27
CCDC88C-205ENST00000553403 RLFQ13129 1914 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 TUBB4AP04350 444 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 FECHP22830 423 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 MTIF2P46199 727 aaKnown RBP29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 LRRC41Q15345 812 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 CEP135Q66GS9 1140 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 IL31RAQ8NI17 732 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 DCPSQ96C86 337 aaKnown RBP29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 MAF1Q9H063 256 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 JADE2Q9NQC1 790 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 MYPNQ86TC9 1320 aa29.23■■■□□ 2.27
CCDC88C-205ENST00000553403 ATP2A1O14983 1001 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 PRKCSHP14314 528 aaPredicted RBP29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 CASP14P31944 242 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 MAP3K9P80192 1104 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 ZCWPW2Q504Y3 356 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 RNF207Q6ZRF8 634 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 RBM46Q8TBY0 533 aaKnown RBP29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 TAAR1Q96RJ0 339 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 BHMT2Q9H2M3 363 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 RNF146Q9NTX7 359 aa29.22■■■□□ 2.27
CCDC88C-205ENST00000553403 CHMP2AO43633 222 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 CTTNQ14247 550 aaKnown RBP29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 TKFCQ3LXA3 575 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 GLIS3Q8NEA6 775 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 CPLX3Q8WVH0 158 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 PAXBP1Q9Y5B6 917 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 ZSCAN12O43309 604 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 XRRA1Q6P2D8 792 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 SLC30A10Q6XR72 485 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 TPH2Q8IWU9 490 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 MYRIPQ8NFW9 859 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 WNK4Q96J92 1243 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 ZFP91Q96JP5 570 aaPredicted RBP29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 REEP2Q9BRK0 252 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 KCNH7Q9NS40 1196 aa29.21■■■□□ 2.27
CCDC88C-205ENST00000553403 FXR1P51114 621 aaKnown RBP eCLIP29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 MRPS9P82933 396 aaKnown RBP29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 CACNB1Q02641 598 aaPredicted RBP29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 PGM5Q15124 567 aa29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 LRRC55Q6ZSA7 311 aa29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 SULF1Q8IWU6 871 aa29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 NACC1Q96RE7 527 aa29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 NOC4LQ9BVI4 516 aaKnown RBP29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 AGO4Q9HCK5 861 aaKnown RBP29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 SNCAIPQ9Y6H5 919 aa29.2■■■□□ 2.26
CCDC88C-205ENST00000553403 B4DLN1 442 aa29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 FKBP3Q00688 224 aaKnown RBP29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 MIIPQ5JXC2 388 aa29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 PPP1R3FQ6ZSY5 799 aaPredicted RBP29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 CEP63Q96MT8 703 aa29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 PXMP2Q9NR77 195 aa29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 HOXC10Q9NYD6 342 aa29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 POLR2AP24928 1970 aaKnown RBP29.19■■■□□ 2.26
CCDC88C-205ENST00000553403 PES1O00541 588 aaKnown RBP29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 HSPA6P17066 643 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 GAP43P17677 238 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 RINT1Q6NUQ1 792 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 PPP4R3CPQ6ZMV5 832 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 SCFD1Q8WVM8 642 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 PDCD2LQ9BRP1 358 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 NUP58Q9BVL2 599 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 TBC1D7Q9P0N9 293 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 ZNF214Q9UL59 606 aaPredicted RBP29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 RIPK3Q9Y572 518 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 RAD51AP2Q09MP3 1159 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 TBC1D8BQ0IIM8 1120 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 SNRNP48Q6IEG0 339 aaKnown RBP29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 NSMFQ6X4W1 530 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 RETREG2Q8NC44 543 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 RMDN3Q96TC7 470 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 RUSC1Q9BVN2 902 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 FGFBP2Q9BYJ0 223 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 ZHX3Q9H4I2 956 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 KCND2Q9NZV8 630 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 COL4A3BPQ9Y5P4 624 aa29.18■■■□□ 2.26
CCDC88C-205ENST00000553403 UQCRHLA0A096LP55 91 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 DHX15O43143 795 aaKnown RBP29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 UQCRHP07919 91 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 EIF2AK2P19525 551 aaKnown RBP29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 PRKG1Q13976 671 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 VGLL4Q14135 290 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 MAN2A1Q16706 1144 aa29.17■■■□□ 2.26
CCDC88C-205ENST00000553403 ERGIC2Q96RQ1 377 aa29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms