RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 MYH3P11055 1940 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 PNMA6EA0A0J9YXQ4 647 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 DNAJA2O60884 412 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 DPEP1P16444 411 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 KCNA3P22001 575 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 IGHMBP2P38935 993 aaKnown RBP7.06□□□□□ -1.28
SCAF11-213ENST00000550629 TAF7LQ5H9L4 462 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 SOGA3Q5TF21 947 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 SLC23A3Q6PIS1 610 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 ERC1Q8IUD2 1116 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 SLFN12Q8IYM2 578 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 TTLL6Q8N841 843 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 Q96M66 194 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 MPHOSPH8Q99549 860 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 LRRC3Q9BY71 257 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 BACH2Q9BYV9 841 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 DCTPP1Q9H773 170 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 ATP6V0A2Q9Y487 856 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 COL11A2P13942 1736 aaPredicted RBP7.06□□□□□ -1.28
SCAF11-213ENST00000550629 KIAA1551Q9HCM1 1747 aa7.06□□□□□ -1.28
SCAF11-213ENST00000550629 MROH5Q6ZUA9 1318 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 A0A0G2JLW4 131 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 RBM47A0AV96 593 aaKnown RBP7.05□□□□□ -1.28
SCAF11-213ENST00000550629 EYA2O00167 538 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 RAB11FIP3O75154 756 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 CHRNA5P30532 468 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 IL15P40933 162 aaPredicted RBP7.05□□□□□ -1.28
SCAF11-213ENST00000550629 CRKP46108 304 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 DALRD3Q5D0E6 543 aaKnown RBP7.05□□□□□ -1.28
SCAF11-213ENST00000550629 LDHAL6AQ6ZMR3 332 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 SP8Q8IXZ3 490 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 GCC1Q96CN9 775 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 SYT17Q9BSW7 474 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 ANKRD2Q9GZV1 360 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 TMX4Q9H1E5 349 aaPredicted RBP7.05□□□□□ -1.28
SCAF11-213ENST00000550629 BRMS1Q9HCU9 246 aa7.05□□□□□ -1.28
SCAF11-213ENST00000550629 LRRC37AA6NMS7 1700 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 LRRC10BA6NIK2 292 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 SURF6O75683 361 aaKnown RBP7.04□□□□□ -1.28
SCAF11-213ENST00000550629 G3BP1Q13283 466 aaKnown RBP eCLIP7.04□□□□□ -1.28
SCAF11-213ENST00000550629 ATG9AQ7Z3C6 839 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 THAP5Q7Z6K1 395 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 ZSWIM9Q86XI8 627 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 SMC5Q8IY18 1101 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 RTKN2Q8IZC4 609 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 BAHD1Q8TBE0 780 aaPredicted RBP7.04□□□□□ -1.28
SCAF11-213ENST00000550629 CELF1Q92879 486 aaKnown RBP7.04□□□□□ -1.28
SCAF11-213ENST00000550629 UBE2FQ969M7 185 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 ZNF622Q969S3 477 aaKnown RBP eCLIP7.04□□□□□ -1.28
SCAF11-213ENST00000550629 CARS2Q9HA77 564 aaKnown RBP7.04□□□□□ -1.28
SCAF11-213ENST00000550629 GPR108Q9NPR9 543 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 CNNM1Q9NRU3 951 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 PODXL2Q9NZ53 605 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 UBP1Q9NZI7 540 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 LMCD1Q9NZU5 365 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 ZSWIM5Q9P217 1185 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 RIPOR2Q9Y4F9 1068 aa7.04□□□□□ -1.28
SCAF11-213ENST00000550629 XDHP47989 1333 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 PDE8BO95263 885 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 ZNF76P36508 570 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 KCNMB1Q16558 191 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 CENPQQ7L2Z9 268 aaPredicted RBP7.03□□□□□ -1.28
SCAF11-213ENST00000550629 NLGN2Q8NFZ4 835 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 PIWIL2Q8TC59 973 aaKnown RBP7.03□□□□□ -1.28
SCAF11-213ENST00000550629 KIF1BPQ96EK5 621 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 CCDC136Q96JN2 1154 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 FAM84AQ96KN4 292 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 CCDC74BQ96LY2 380 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 RTFDC1Q9BY42 306 aaPredicted RBP7.03□□□□□ -1.28
SCAF11-213ENST00000550629 VPS33BQ9H267 617 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 MINPP1Q9UNW1 487 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 PCDHB14Q9Y5E9 798 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 SRCAPQ6ZRS2 3230 aa7.03□□□□□ -1.28
SCAF11-213ENST00000550629 SLC22A31A6NKX4 558 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 WASH4PA8MWX3 477 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 ATE1O95260 518 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 TNNI2P48788 182 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 CHRNDQ07001 517 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 OS9Q13438 667 aaPredicted RBP7.02□□□□□ -1.29
SCAF11-213ENST00000550629 PUM3Q15397 648 aaKnown RBP7.02□□□□□ -1.29
SCAF11-213ENST00000550629 SEZ6Q53EL9 994 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 FBLN7Q53RD9 439 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 CCDC93Q567U6 631 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 METTL24Q5JXM2 366 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 SPOCD1Q6ZMY3 1216 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 C15orf52Q6ZUT6 534 aaKnown RBP7.02□□□□□ -1.29
SCAF11-213ENST00000550629 PHACTR4Q8IZ21 702 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 VGLL2Q8N8G2 317 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 SUPT20HQ8NEM7 779 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 KLHDC4Q8TBB5 520 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 PSMD1Q99460 953 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 KIF2CQ99661 725 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 LRRCC1Q9C099 1032 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 SIL1Q9H173 461 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 DUSP15Q9H1R2 295 aaPredicted RBP7.02□□□□□ -1.29
SCAF11-213ENST00000550629 FAM53CQ9NYF3 392 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 PA2G4Q9UQ80 394 aaKnown RBP7.02□□□□□ -1.29
SCAF11-213ENST00000550629 EXOC6BQ9Y2D4 811 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 COL4A1P02462 1669 aa7.02□□□□□ -1.29
SCAF11-213ENST00000550629 BRCA1P38398 1863 aaKnown RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms