RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 FAPQ12884 760 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 MTMR1Q13613 665 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 SEC23AQ15436 765 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 ZNF174Q15697 407 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 FSTL4Q6MZW2 842 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 CBLL1Q75N03 491 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-205ENST00000550592 ATG4DQ86TL0 474 aaPredicted RBP6.69□□□□□ -1.34
LIMA1-205ENST00000550592 CLEC4DQ8WXI8 215 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 KIRREL1Q96J84 757 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 PALD1Q9ULE6 856 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 PCDHB4Q9Y5E5 795 aa6.69□□□□□ -1.34
LIMA1-205ENST00000550592 TCRBV5S2A0A599 114 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 F8W031 263 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-205ENST00000550592 K7ESF4 209 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 SCDO00767 359 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 HIP1RO75146 1068 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 ULK1O75385 1050 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 KRT37O76014 449 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 S100BP04271 92 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-205ENST00000550592 GJA4P35212 333 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 TUSC3Q13454 348 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 SLC9A5Q14940 896 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 CC2D1AQ6P1N0 951 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-205ENST00000550592 MILR1Q7Z6M3 343 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 PASD1Q8IV76 773 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 RBM12BQ8IXT5 1001 aaKnown RBP6.68□□□□□ -1.34
LIMA1-205ENST00000550592 KIAA1958Q8N8K9 716 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 ASPSCR1Q9BZE9 553 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 TRIM8Q9BZR9 551 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 RXFP1Q9HBX9 757 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 ACSS2Q9NR19 701 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 KCNH7Q9NS40 1196 aa6.68□□□□□ -1.34
LIMA1-205ENST00000550592 FAM90A27PA6NNH2 459 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 LTFP02788 710 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 PTPN1P18031 435 aaKnown RBP6.67□□□□□ -1.34
LIMA1-205ENST00000550592 SLC9A1P19634 815 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 SESN3P58005 492 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 PHC1P78364 1004 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 SMAD3P84022 425 aaKnown RBP6.67□□□□□ -1.34
LIMA1-205ENST00000550592 SMAD2Q15796 467 aaKnown RBP6.67□□□□□ -1.34
LIMA1-205ENST00000550592 GPR158Q5T848 1215 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 CPZQ66K79 652 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 IQSEC1Q6DN90 963 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 CNTD1Q8N815 330 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 TTLL11Q8NHH1 800 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 COG1Q8WTW3 980 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 SLC5A5Q92911 643 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 TSPAN17Q96FV3 270 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 INTS4Q96HW7 963 aaKnown RBP6.67□□□□□ -1.34
LIMA1-205ENST00000550592 ELF4Q99607 663 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-205ENST00000550592 MENTQ9BUN1 341 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 KLHL42Q9P2K6 505 aa6.67□□□□□ -1.34
LIMA1-205ENST00000550592 BUB1BO60566 1050 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-205ENST00000550592 PRKD3O94806 890 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 CYP17A1P05093 508 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 SDHBP21912 280 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 SDHAP31040 664 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 MAPKAPK2P49137 400 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 KIF11P52732 1056 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 YBX1P67809 324 aaKnown RBP6.66□□□□□ -1.34
LIMA1-205ENST00000550592 ITKQ08881 620 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 RAB3GAP1Q15042 981 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 TERF2Q15554 542 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 DDB1Q16531 1140 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 BROXQ5VW32 411 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 BTBD8Q5XKL5 378 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 RPTNQ6XPR3 784 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 SLC6A17Q9H1V8 727 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 ZFP64Q9NPA5 681 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 KLHL14Q9P2G3 628 aa6.66□□□□□ -1.34
LIMA1-205ENST00000550592 DBR1Q9UK59 544 aaKnown RBP6.66□□□□□ -1.34
LIMA1-205ENST00000550592 OAS3Q9Y6K5 1087 aaKnown RBP6.66□□□□□ -1.34
LIMA1-205ENST00000550592 SCO2A0A1W2PP80 73 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 NUDT19A8MXV4 375 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 ACOT7O00154 380 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 ALDH1L1O75891 902 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 C4BPAP04003 597 aaKnown RBP6.65□□□□□ -1.34
LIMA1-205ENST00000550592 LSP1P33241 339 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 PRR5P85299 388 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 TMEM62Q0P6H9 643 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 ODR4Q5SWX8 454 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 ADGRF1Q5T601 910 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 SYDE2Q5VT97 1194 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 RASSF3Q86WH2 238 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 CLRN3Q8NCR9 226 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 ARRDC4Q8NCT1 418 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 CCDC8Q9H0W5 538 aaPredicted RBP6.65□□□□□ -1.34
LIMA1-205ENST00000550592 PCIF1Q9H4Z3 704 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 VTA1Q9NP79 307 aa6.65□□□□□ -1.34
LIMA1-205ENST00000550592 THRAP3Q9Y2W1 955 aaKnown RBP6.65□□□□□ -1.34
LIMA1-205ENST00000550592 OR14I1A6ND48 311 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 ABLIM1O14639 778 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 GLI1P08151 1106 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 PTX3P26022 381 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-205ENST00000550592 HERVK_113P62684 666 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 LRRC32Q14392 662 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 TMEM132BQ14DG7 1078 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 IRF2BP1Q8IU81 584 aa6.64□□□□□ -1.35
LIMA1-205ENST00000550592 ZNF610Q8N9Z0 462 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms