RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 JAG1P78504 1218 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 SP4Q02446 784 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 CKAP4Q07065 602 aaKnown RBP14.92□□□□□ -0.02
PTPN1-202ENST00000541713 KLRC3Q07444 240 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 LRRC55Q6ZSA7 311 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 CATSPER3Q86XQ3 398 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 TRIM58Q8NG06 486 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 ACBD3Q9H3P7 528 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 HPCAL4Q9UM19 191 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 ABCA3Q99758 1704 aa14.92□□□□□ -0.02
PTPN1-202ENST00000541713 BBOX1O75936 387 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 COG2Q14746 738 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 MAATS1Q7Z4T9 603 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 EHBP1Q8NDI1 1231 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 UHMK1Q8TAS1 419 aaKnown RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 SCFD1Q8WVM8 642 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 GJD4Q96KN9 370 aaPredicted RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 NOX5Q96PH1 765 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 PCIF1Q9H4Z3 704 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 IRS2Q9Y4H2 1338 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 GOLGA6CA6NDK9 693 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 SMIM23A6NLE4 172 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 GOLGA6DP0CG33 693 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 ACTN2P35609 894 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 ARHGAP4P98171 946 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 RBM26Q5T8P6 1007 aaKnown RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 CPXCR1Q8N123 301 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 GUF1Q8N442 669 aaKnown RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 TSEN2Q8NCE0 465 aaKnown RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 OR2W6PQ8NHA6 318 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 ARL8AQ96BM9 186 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 DNAJC19Q96DA6 116 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 FAM84AQ96KN4 292 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 DNAJC18Q9H819 358 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 GOLGA6AQ9NYA3 693 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 MYO1AQ9UBC5 1043 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 GFPT2O94808 682 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 SYF2O95926 243 aaKnown RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 TRIM49P0CI25 452 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 TRIM49CP0CI26 452 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 MEA1Q16626 185 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 CCNI2Q6ZMN8 369 aaPredicted RBP14.91□□□□□ -0.02
PTPN1-202ENST00000541713 CDAN1Q8IWY9 1227 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 MYCT1Q8N699 235 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 TBC1D22AQ8WUA7 517 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 REEP2Q9BRK0 252 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 JRKLQ9Y4A0 524 aa14.91□□□□□ -0.02
PTPN1-202ENST00000541713 TIAM2Q8IVF5 1701 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 BCORQ6W2J9 1755 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 FAM86B1E9PN63 330 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 CETN3O15182 167 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 RAD17O75943 681 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 GLI1P08151 1106 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 FAM86B2P0C5J1 330 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 IL1R1P14778 569 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 AOC3Q16853 763 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 MAP9Q49MG5 647 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 APOBEC3HQ6NTF7 200 aaKnown RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 PDXDC1Q6P996 788 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 ERGIC2Q96RQ1 377 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 RIC8AQ9NPQ8 531 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 AFF2P51816 1311 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 HEXIM1O94992 359 aaKnown RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 CYP11B2P19099 503 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 CCT5P48643 541 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 ASIC2Q16515 512 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 PHLDB2Q86SQ0 1253 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 CCDC170Q8IYT3 715 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 U2AF1L4Q8WU68 220 aaKnown RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 CCDC43Q96MW1 224 aaKnown RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 CUEDC2Q9H467 287 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 HDAC9Q9UKV0 1011 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 LRP5O75197 1615 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 RBAK-RBAKDNI3L0D1 243 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 FGFR1OPO95684 399 aaKnown RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 DGKZQ13574 1117 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 PAPD7Q5XG87 772 aaKnown RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 BAP1Q92560 729 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 TLR10Q9BXR5 811 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 DNM3Q9UQ16 869 aa14.9□□□□□ -0.02
PTPN1-202ENST00000541713 ZBTB12Q9Y330 459 aaPredicted RBP14.9□□□□□ -0.02
PTPN1-202ENST00000541713 TISP43B9A030 160 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 TBCAO75347 108 aaKnown RBP14.89□□□□□ -0.03
PTPN1-202ENST00000541713 PTK2Q05397 1052 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 PDCLQ13371 301 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 ACER1Q8TDN7 264 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 DPH5Q9H2P9 285 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 FBXO28Q9NVF7 368 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 STK17AQ9UEE5 414 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 TMEM150BA6NC51 233 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 ATP8B1O43520 1251 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 ARSHQ5FYA8 562 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 BBXQ8WY36 941 aaPredicted RBP14.89□□□□□ -0.03
PTPN1-202ENST00000541713 EXOC4Q96A65 974 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 RUSC1Q9BVN2 902 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 QTRT2Q9H974 415 aaKnown RBP14.89□□□□□ -0.03
PTPN1-202ENST00000541713 PPP1R1BQ9UD71 204 aaPredicted RBP14.89□□□□□ -0.03
PTPN1-202ENST00000541713 ARMCX3Q9UH62 379 aaPredicted RBP14.89□□□□□ -0.03
PTPN1-202ENST00000541713 DOCK2Q92608 1830 aa14.89□□□□□ -0.03
PTPN1-202ENST00000541713 COL14A1Q05707 1796 aaKnown RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms