RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 SYTL5Q8TDW5 730 aaPredicted RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 NOC3LQ8WTT2 800 aaKnown RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 SCFD1Q8WVM8 642 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 KLRG1Q96E93 195 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 MXRA8Q9BRK3 442 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 EHMT1Q9H9B1 1298 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 AGPAT5Q9NUQ2 364 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 DNAI1Q9UI46 699 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 PARP14Q460N5 1801 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 SSC5DA1L4H1 1573 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 DICER1Q9UPY3 1922 aaKnown RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 FANCGO15287 622 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 PSMD2Q13200 908 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 COBLL1Q53SF7 1204 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 LRRC55Q6ZSA7 311 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 CNKSR2Q8WXI2 1034 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 HSD17B14Q9BPX1 270 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 SH2D3AQ9BRG2 576 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 IRX2Q9BZI1 471 aaPredicted RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 MRPL44Q9H9J2 332 aaKnown RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 SPON1Q9HCB6 807 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 KCNH7Q9NS40 1196 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 ZNF112Q9UJU3 913 aa16.12■□□□□ 0.17
CLIP1-216ENST00000541410 RBBP6Q7Z6E9 1792 aaKnown RBP16.12■□□□□ 0.17
CLIP1-216ENST00000541410 PPP1R2P41236 205 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 USP14P54578 494 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 MRPS9P82933 396 aaKnown RBP16.11■□□□□ 0.17
CLIP1-216ENST00000541410 FAM114A1Q8IWE2 563 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 CHP1Q99653 195 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 LZTFL1Q9NQ48 299 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 RNF181Q9P0P0 153 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 RASSF10A6NK89 507 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 ADM5C9JUS6 153 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 ZBED4O75132 1171 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 MYBP10242 640 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 TRIM21P19474 475 aaKnown RBP16.11■□□□□ 0.17
CLIP1-216ENST00000541410 DNM2P50570 870 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 PPP2R5CQ13362 524 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 ACRBPQ8NEB7 543 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 KIF18AQ8NI77 898 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 POLR3CQ9BUI4 534 aaPredicted RBP16.11■□□□□ 0.17
CLIP1-216ENST00000541410 IKZF4Q9H2S9 585 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 PAXBP1Q9Y5B6 917 aa16.11■□□□□ 0.17
CLIP1-216ENST00000541410 PHIPQ8WWQ0 1821 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 PRPF6O94906 941 aaKnown RBP16.1■□□□□ 0.17
CLIP1-216ENST00000541410 KCNA1Q09470 495 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 PLS1Q14651 629 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 TRIM65Q6PJ69 517 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 TSG101Q99816 390 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 AS3MTQ9HBK9 375 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 RLFQ13129 1914 aa16.1■□□□□ 0.17
CLIP1-216ENST00000541410 ZSCAN12O43309 604 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 ABL1P00519 1130 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 LRRC63Q05C16 580 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 SNRNP48Q6IEG0 339 aaKnown RBP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 RINT1Q6NUQ1 792 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 RNF207Q6ZRF8 634 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 MAEAQ7L5Y9 396 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 MCF2L2Q86YR7 1114 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 TEKT3Q9BXF9 490 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 RNF146Q9NTX7 359 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 SAMM50Q9Y512 469 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 EYA4O95677 639 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 BAATQ14032 418 aaPredicted RBP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 TKFCQ3LXA3 575 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 ZCWPW2Q504Y3 356 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 KSR1Q8IVT5 923 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 RMDN3Q96TC7 470 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 GTPBP4Q9BZE4 634 aaKnown RBP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 FAM207AQ9NSI2 230 aaPredicted RBP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 LUC7L2Q9Y383 392 aaKnown RBP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 V9GYY5 206 aaPredicted RBP16.09■□□□□ 0.17
CLIP1-216ENST00000541410 MYH11P35749 1972 aa16.09■□□□□ 0.17
CLIP1-216ENST00000541410 FRMD3A2A2Y4 597 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 EPHB6O15197 1021 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 ITGB3BPQ13352 177 aaPredicted RBP16.08■□□□□ 0.17
CLIP1-216ENST00000541410 PGM5Q15124 567 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 VWA3BQ502W6 1294 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 LXNQ9BS40 222 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 NDST4Q9H3R1 872 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 ADGRG1Q9Y653 693 aa16.08■□□□□ 0.17
CLIP1-216ENST00000541410 RPTORQ8N122 1335 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 PITPNM2Q9BZ72 1349 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 A0A1W2PQC6 194 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 TESPA1A2RU30 521 aaPredicted RBP16.08■□□□□ 0.16
CLIP1-216ENST00000541410 DYNC1I1O14576 645 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 SORBS3O60504 671 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 USP2O75604 605 aaPredicted RBP16.08■□□□□ 0.16
CLIP1-216ENST00000541410 YBX3P16989 372 aaKnown RBP eCLIP16.08■□□□□ 0.16
CLIP1-216ENST00000541410 HOXD13P35453 343 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 ETF1P62495 437 aaKnown RBP16.08■□□□□ 0.16
CLIP1-216ENST00000541410 SETQ01105 290 aaPredicted RBP16.08■□□□□ 0.16
CLIP1-216ENST00000541410 MTMR1Q13613 665 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 CCDC40Q4G0X9 1142 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 SMCR8Q8TEV9 937 aaPredicted RBP16.08■□□□□ 0.16
CLIP1-216ENST00000541410 WDR24Q96S15 920 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 KCTD10Q9H3F6 313 aa16.08■□□□□ 0.16
CLIP1-216ENST00000541410 DOCK5Q9H7D0 1870 aa16.07■□□□□ 0.16
CLIP1-216ENST00000541410 TMEM150BA6NC51 233 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms