RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TUBB2BQ9BVA1 445 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 TUFT1Q9NNX1 390 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EMILIN3Q9NT22 766 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 NFKBIEO00221 500 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EYA4O95677 639 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 GNA14O95837 355 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 MUTP22033 750 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 RPS12P25398 132 aaKnown RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 TSR1Q2NL82 804 aaKnown RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 ARHGAP29Q52LW3 1261 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 FBXO38Q6PIJ6 1188 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 B3GNT9Q6UX72 402 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 RSRC2Q7L4I2 434 aaKnown RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 LDHDQ86WU2 507 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EDEM3Q9BZQ6 932 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 PLAGL2Q9UPG8 496 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 RPTORQ8N122 1335 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EIF3CLB5ME19 914 aaKnown RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 ZNF76P36508 570 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 TNIP1Q15025 636 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 BMT2Q1RMZ1 405 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EIF3CQ99613 913 aaKnown RBP15.26■□□□□ 0.03
RTN3-210ENST00000540798 REEP2Q9BRK0 252 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EHMT1Q9H9B1 1298 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 FBXO28Q9NVF7 368 aa15.26■□□□□ 0.03
RTN3-210ENST00000540798 EPHB6O15197 1021 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 ICAM1P05362 532 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 CACNB1Q02641 598 aaPredicted RBP15.25■□□□□ 0.03
RTN3-210ENST00000540798 PPP2R3AQ06190 1150 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 RASA3Q14644 834 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 ZNF569Q5MCW4 686 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 HAUS4Q9H6D7 363 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 NHEJ1Q9H9Q4 299 aaPredicted RBP15.25■□□□□ 0.03
RTN3-210ENST00000540798 TRAF3IP3Q9Y228 551 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 MEIS1O00470 390 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 PABPC4Q13310 644 aaKnown RBP eCLIP15.25■□□□□ 0.032e-7■■■■□ 20.1
RTN3-210ENST00000540798 TRIM59Q8IWR1 403 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 SLC35F6Q8N357 371 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 MNS1Q8NEH6 495 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 FEZ1Q99689 392 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 TBC1D7Q9P0N9 293 aa15.25■□□□□ 0.03
RTN3-210ENST00000540798 INPP5BP32019 993 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 ZYXQ15942 572 aaKnown RBP15.24■□□□□ 0.03
RTN3-210ENST00000540798 CEP55Q53EZ4 464 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 BAP1Q92560 729 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 LTBP3Q9NS15 1303 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 TRAF5O00463 557 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 WDR46O15213 610 aaKnown RBP15.24■□□□□ 0.03
RTN3-210ENST00000540798 SLITRK3O94933 977 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 HOXD13P35453 343 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 CASP5P51878 434 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 KRT83P78385 493 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 SETQ01105 290 aaPredicted RBP15.24■□□□□ 0.03
RTN3-210ENST00000540798 KCNMA1Q12791 1236 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 LPAR1Q92633 364 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 SECISBP2LQ93073 1101 aaKnown RBP15.24■□□□□ 0.03
RTN3-210ENST00000540798 KIAA1683Q9H0B3 1180 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 ZNHIT6Q9NWK9 470 aaKnown RBP15.24■□□□□ 0.03
RTN3-210ENST00000540798 RABGAP1Q9Y3P9 1069 aa15.24■□□□□ 0.03
RTN3-210ENST00000540798 LCA5LO95447 670 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 CYLC1P35663 651 aaPredicted RBP15.23■□□□□ 0.03
RTN3-210ENST00000540798 JDP2Q8WYK2 163 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 ZNF341Q9BYN7 854 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 CDC23Q9UJX2 597 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 EGFRP00533 1210 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 KRT18P05783 430 aaKnown RBP15.23■□□□□ 0.03
RTN3-210ENST00000540798 PRELPP51888 382 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 LRCH2Q5VUJ6 765 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 CLEC4DQ8WXI8 215 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 UBXN4Q92575 508 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 PURBQ96QR8 312 aaKnown RBP15.23■□□□□ 0.03
RTN3-210ENST00000540798 RUSC1Q9BVN2 902 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 RGL1Q9NZL6 768 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 FRMPD4Q14CM0 1322 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 CTAGE9A4FU28 777 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 AMPD2Q01433 879 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 TNFAIP1Q13829 316 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 SFR1Q86XK3 245 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 PCMTD1Q96MG8 357 aaPredicted RBP15.23■□□□□ 0.03
RTN3-210ENST00000540798 OLFML3Q9NRN5 406 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 FAM53CQ9NYF3 392 aa15.23■□□□□ 0.03
RTN3-210ENST00000540798 BCRP11274 1271 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 RAD51AP2Q09MP3 1159 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 RINT1Q6NUQ1 792 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 NELFCDQ8IXH7 590 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 NAPGQ99747 312 aaPredicted RBP15.22■□□□□ 0.03
RTN3-210ENST00000540798 BHMT2Q9H2M3 363 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 DDX41Q9UJV9 622 aaKnown RBP15.22■□□□□ 0.03
RTN3-210ENST00000540798 RLFQ13129 1914 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 PHIPQ8WWQ0 1821 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 CTNND1O60716 968 aaKnown RBP15.22■□□□□ 0.03
RTN3-210ENST00000540798 CYP4A11Q02928 519 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 KNOP1Q1ED39 458 aaKnown RBP15.22■□□□□ 0.03
RTN3-210ENST00000540798 PRPF38AQ8NAV1 312 aaKnown RBP15.22■□□□□ 0.03
RTN3-210ENST00000540798 AGBL1Q96MI9 1066 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 ARHGAP20Q9P2F6 1191 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 FAM184BQ9ULE4 1060 aa15.22■□□□□ 0.03
RTN3-210ENST00000540798 PDXKO00764 312 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 NOL4O94818 638 aa15.21■□□□□ 0.03
RTN3-210ENST00000540798 GAP43P17677 238 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms