RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ZDHHC14	Q8IZN3	488 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	SYNPO	Q8N3V7	929 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	JMY	Q8N9B5	988 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	TP53I13	Q8NBR0	393 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-238	ENST00000534296	PCDH19	Q8TAB3	1148 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	WDR48	Q8TAF3	677 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	RELT	Q969Z4	430 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	LCOR	Q96JN0	433 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-238	ENST00000534296	ZSWIM3	Q96MP5	696 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	LNPK	Q9C0E8	428 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	TMEM168	Q9H0V1	697 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	SLC52A2	Q9HAB3	445 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	BARX1	Q9HBU1	254 aa	Predicted RBP	4.14	□□□□□ -1.75
CD44-238	ENST00000534296	RIC8B	Q9NVN3	520 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	ARHGAP28	Q9P2N2	729 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	SRPK3	Q9UPE1	567 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	PCDHA9	Q9Y5H5	950 aa		4.14	□□□□□ -1.75
CD44-238	ENST00000534296	OTOL1	A6NHN0	477 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	C9orf118	A6NHY6	69 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	PLD2	O14939	933 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	NKRF	O15226	690 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	PYGM	P11217	842 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	PDE6A	P16499	860 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	DLX2	Q07687	328 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	SURF1	Q15526	300 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	CCDC144B	Q3MJ40	725 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	TAF7L	Q5H9L4	462 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	BTBD8	Q5XKL5	378 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	TRMT10B	Q6PF06	316 aa	Known RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	DPP8	Q6V1X1	898 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	BRAP	Q7Z569	592 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	DDX53	Q86TM3	631 aa	Known RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	ZNF761	Q86XN6	746 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	ADGRG2	Q8IZP9	1017 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	LGI4	Q8N135	537 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	SYT8	Q8NBV8	401 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	GSTCD	Q8NEC7	633 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	CELF4	Q9BZC1	486 aa	Known RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	CD244	Q9BZW8	370 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	XYLT2	Q9H1B5	865 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	NCOA5	Q9HCD5	579 aa	Known RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	SPATA6	Q9NWH7	488 aa	Predicted RBP	4.13	□□□□□ -1.75
CD44-238	ENST00000534296	ARHGAP20	Q9P2F6	1191 aa		4.13	□□□□□ -1.75
CD44-238	ENST00000534296	PRAMEF25	A6NGN4	478 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	MROH6	A6NGR9	719 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	DDX3X	O00571	662 aa	Known RBP eCLIP	4.12	□□□□□ -1.75
CD44-238	ENST00000534296	PTPN1	P18031	435 aa	Known RBP	4.12	□□□□□ -1.75
CD44-238	ENST00000534296	ADAM9	Q13443	819 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	SMAD2	Q15796	467 aa	Known RBP	4.12	□□□□□ -1.75
CD44-238	ENST00000534296	SKIDA1	Q1XH10	827 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	ZNF568	Q3ZCX4	644 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	FNDC3B	Q53EP0	1204 aa	Known RBP	4.12	□□□□□ -1.75
CD44-238	ENST00000534296	CD276	Q5ZPR3	534 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	PTRH1	Q86Y79	214 aa	Known RBP	4.12	□□□□□ -1.75
CD44-238	ENST00000534296	HOMER1	Q86YM7	354 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	CISD2	Q8N5K1	135 aa	Known RBP	4.12	□□□□□ -1.75
CD44-238	ENST00000534296	CXorf38	Q8TB03	319 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	SH3TC2	Q8TF17	1288 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	CLEC4D	Q8WXI8	215 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	USP35	Q9P2H5	1018 aa		4.12	□□□□□ -1.75
CD44-238	ENST00000534296	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	4.11	□□□□□ -1.75
CD44-238	ENST00000534296	SLC12A8	A0AV02	714 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	OPA1	O60313	960 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	NOBOX	O60393	691 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	CLASP2	O75122	1294 aa	Known RBP	4.11	□□□□□ -1.75
CD44-238	ENST00000534296	RASGRP1	O95267	797 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	LTF	P02788	710 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	CELA3B	P08861	270 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	ZNF28	P17035	718 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	CNR2	P34972	360 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	IL13	P35225	146 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	IGFALS	P35858	605 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	TCEA2	Q15560	299 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	MCTP2	Q6DN12	878 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	UBE2R2	Q712K3	238 aa	Predicted RBP	4.11	□□□□□ -1.75
CD44-238	ENST00000534296	OSTM1	Q86WC4	334 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	RBM12B	Q8IXT5	1001 aa	Known RBP	4.11	□□□□□ -1.75
CD44-238	ENST00000534296	IFNL2	Q8IZJ0	200 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	LILRB2	Q8N423	598 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	C2orf69	Q8N8R5	385 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	DTX3	Q8N9I9	347 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	TXNDC5	Q8NBS9	432 aa	Known RBP	4.11	□□□□□ -1.75
CD44-238	ENST00000534296	IGDCC4	Q8TDY8	1250 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	CABP5	Q9NP86	173 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296	ZFP69B	Q9UJL9	534 aa		4.11	□□□□□ -1.75
CD44-238	ENST00000534296		A0A0G2JLL6	359 aa	Predicted RBP	4.1	□□□□□ -1.75
CD44-238	ENST00000534296	TCRBV16S1A1N1	A0A5B0	115 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ZNF839	A8K0R7	811 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296		H0Y858	1186 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ZNF561-AS1	K7EIQ3	104 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	MAN2B1	O00754	1011 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	KCNQ2	O43526	872 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	ASL	P04424	464 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	CKM	P06732	381 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	GLRB	P48167	497 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	JAM2	P57087	298 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	HERVK_113	P62684	666 aa		4.1	□□□□□ -1.75
CD44-238	ENST00000534296	LACTB	P83111	547 aa	Predicted RBP	4.1	□□□□□ -1.75
CD44-238	ENST00000534296	PFKP	Q01813	784 aa		4.1	□□□□□ -1.75

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