RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	SP2	Q02086	613 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	ITGB3BP	Q13352	177 aa	Predicted RBP	13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	STK38	Q15208	465 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	CCDC62	Q6P9F0	684 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	CLEC17A	Q6ZS10	378 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	DHX37	Q8IY37	1157 aa	Known RBP	13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	AFG1L	Q8WV93	481 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	SLC5A5	Q92911	643 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	CDHR1	Q96JP9	859 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	ZNF577	Q9BSK1	485 aa		13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	DDX41	Q9UJV9	622 aa	Known RBP	13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.47	□□□□□ -0.25
PVT1-215	ENST00000522963	BRCA2	P51587	3418 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	IPO5	O00410	1097 aa	Known RBP	13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	LAD1	O00515	517 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	SPTLC2	O15270	562 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	MARCH6	O60337	910 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	PQBP1	O60828	265 aa	Known RBP	13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	GGPS1	O95749	300 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	KCNA2	P16389	499 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	PRPH	P41219	470 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	CPT1A	P50416	773 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	PSMC6	P62333	389 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	IL17A	Q16552	155 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	PRPF38B	Q5VTL8	546 aa	Known RBP	13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	SPATA32	Q96LK8	384 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	FAM20A	Q96MK3	541 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	BCAS3	Q9H6U6	928 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	MLXIP	Q9HAP2	919 aa		13.46	□□□□□ -0.25
PVT1-215	ENST00000522963	FBXO2	Q9UK22	296 aa	Predicted RBP	13.46	□□□□□ -0.25
PVT1-215	ENST00000522963		A0A0U1RQG5	324 aa	Predicted RBP	13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	DHX15	O43143	795 aa	Known RBP	13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	PPP6R2	O75170	966 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	PSMD10	O75832	226 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	TGFB3	P10600	412 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	UBA1	P22314	1058 aa	Known RBP	13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	TXK	P42681	527 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	SP4	Q02446	784 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	TLE2	Q04725	743 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	GRIN1	Q05586	938 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	ARHGAP1	Q07960	439 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	LRCH2	Q5VUJ6	765 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	KCNV1	Q6PIU1	500 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	SLFN12	Q8IYM2	578 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	KCNG4	Q8TDN1	519 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	PPP1R13L	Q8WUF5	828 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	SENP7	Q9BQF6	1050 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	PRKAG2	Q9UGJ0	569 aa		13.45	□□□□□ -0.26
PVT1-215	ENST00000522963	GAS7	O60861	476 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	CABYR	O75952	493 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	MMP3	P08254	477 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	NKX3-2	P78367	333 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	LAMC2	Q13753	1193 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	ARL6IP4	Q66PJ3	421 aa	Known RBP	13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	DTHD1	Q6ZMT9	781 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	SPATA33	Q96N06	139 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	CLIC6	Q96NY7	704 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	RIT2	Q99578	217 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	TTC12	Q9H892	705 aa	Predicted RBP	13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	VAV3	Q9UKW4	847 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	PCDHA7	Q9UN72	937 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	PCDHA12	Q9UN75	941 aa		13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	SRPRB	Q9Y5M8	271 aa	Known RBP	13.44	□□□□□ -0.26
PVT1-215	ENST00000522963	NFASC	O94856	1347 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	ELP1	O95163	1332 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	VWA3A	A6NCI4	1184 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	DCDC2C	A8MYV0	355 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	DDX39A	O00148	427 aa	Known RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	ARVCF	O00192	962 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	TEC	P42680	631 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	ME1	P48163	572 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	FXR2	P51116	673 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	PURA	Q00577	322 aa	Known RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	SPIRE1	Q08AE8	756 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	ITGA7	Q13683	1181 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	NEDD9	Q14511	834 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	FAM47C	Q5HY64	1035 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	CELF3	Q5SZQ8	465 aa	Known RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	B3GNT9	Q6UX72	402 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	CYFIP1	Q7L576	1253 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	KRI1	Q8N9T8	703 aa	Known RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	GBP4	Q96PP9	640 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	SDF4	Q9BRK5	362 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	MTG1	Q9BT17	334 aa	Predicted RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	TEKT3	Q9BXF9	490 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	UNC45A	Q9H3U1	944 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	TBC1D22B	Q9NU19	505 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	TELO2	Q9Y4R8	837 aa		13.43	□□□□□ -0.26
PVT1-215	ENST00000522963	TNRC18	O15417	2968 aa	Predicted RBP	13.43	□□□□□ -0.26
PVT1-215	ENST00000522963		A6NJR5	290 aa		13.42	□□□□□ -0.26
PVT1-215	ENST00000522963	NOP56	O00567	594 aa	Known RBP	13.42	□□□□□ -0.26
PVT1-215	ENST00000522963	CUTA	O60888	179 aa		13.42	□□□□□ -0.26
PVT1-215	ENST00000522963	CCNE2	O96020	404 aa		13.42	□□□□□ -0.26
PVT1-215	ENST00000522963	ZNF286B	P0CG31	522 aa		13.42	□□□□□ -0.26
PVT1-215	ENST00000522963	PPP2R5C	Q13362	524 aa		13.42	□□□□□ -0.26
PVT1-215	ENST00000522963	SNX17	Q15036	470 aa		13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms