RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 TBX3O15119 743 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 SPTLC2O15270 562 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 ZEB2O60315 1214 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 BMP15O95972 392 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 ASGR1P07306 291 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 MMP3P08254 477 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 MYL3P08590 195 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 CST5P28325 142 aaPredicted RBP17.29■□□□□ 0.36
LSM1-203ENST00000520755 MARCKSP29966 332 aaPredicted RBP17.29■□□□□ 0.36
LSM1-203ENST00000520755 NKX3-2P78367 333 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 HSDL1Q3SXM5 330 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 PPTC7Q8NI37 304 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 FERMT2Q96AC1 680 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 PAWRQ96IZ0 340 aaKnown RBP17.29■□□□□ 0.36
LSM1-203ENST00000520755 SPATA32Q96LK8 384 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 JPH1Q9HDC5 661 aaPredicted RBP17.29■□□□□ 0.36
LSM1-203ENST00000520755 VAV3Q9UKW4 847 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 CEP131Q9UPN4 1083 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 TELO2Q9Y4R8 837 aa17.29■□□□□ 0.36
LSM1-203ENST00000520755 NFASCO94856 1347 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 LAD1O00515 517 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 DHX15O43143 795 aaKnown RBP17.28■□□□□ 0.36
LSM1-203ENST00000520755 MARCH6O60337 910 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 PSMD10O75832 226 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 PRPHP41219 470 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 ACLYP53396 1101 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 SPIRE1Q08AE8 756 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 CCSAPQ6IQ19 270 aaPredicted RBP17.28■□□□□ 0.36
LSM1-203ENST00000520755 TMEM87AQ8NBN3 555 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 TSEN34Q9BSV6 310 aaKnown RBP17.28■□□□□ 0.36
LSM1-203ENST00000520755 SCAND2PQ9GZW5 306 aaPredicted RBP17.28■□□□□ 0.36
LSM1-203ENST00000520755 C11orf49Q9H6J7 331 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 SLC9A2Q9UBY0 812 aa17.28■□□□□ 0.36
LSM1-203ENST00000520755 ELP1O95163 1332 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 A0A1W2PQ45 241 aaPredicted RBP17.27■□□□□ 0.36
LSM1-203ENST00000520755 A0A1W2PQY0 241 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 MOXD2PA6NHM9 499 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 PPP6R2O75170 966 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 DGKDQ16760 1214 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 AXDND1Q5T1B0 1012 aaPredicted RBP17.27■□□□□ 0.36
LSM1-203ENST00000520755 LRCH2Q5VUJ6 765 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 ARL6IP4Q66PJ3 421 aaKnown RBP17.27■□□□□ 0.36
LSM1-203ENST00000520755 B3GNT9Q6UX72 402 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 CXCL17Q6UXB2 119 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 NECAB2Q7Z6G3 386 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 KCNG4Q8TDN1 519 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 GPR20Q99678 358 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 SENP6Q9GZR1 1112 aaPredicted RBP17.27■□□□□ 0.36
LSM1-203ENST00000520755 TBC1D22BQ9NU19 505 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 TCEAL9Q9UHQ7 104 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 PHF24Q9UPV7 400 aa17.27■□□□□ 0.36
LSM1-203ENST00000520755 GAS7O60861 476 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 TXKP42681 527 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 FXR2P51116 673 aaKnown RBP eCLIP17.26■□□□□ 0.35
LSM1-203ENST00000520755 SLFN12Q8IYM2 578 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 VTI1AQ96AJ9 217 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 FAM20AQ96MK3 541 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 CLIC6Q96NY7 704 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 TEKT3Q9BXF9 490 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 PCDHA7Q9UN72 937 aa17.26■□□□□ 0.35
LSM1-203ENST00000520755 SRPRBQ9Y5M8 271 aaKnown RBP17.26■□□□□ 0.35
LSM1-203ENST00000520755 VWA3AA6NCI4 1184 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 POTEMA6NI47 508 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 CHMP2AO43633 222 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 KPNA6O60684 536 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 CCNE2O96020 404 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 ZNF286BP0CG31 522 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 COL6A1P12109 1028 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 CHMP4BP1P59074 171 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 ACTR2P61160 394 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 PURAQ00577 322 aaKnown RBP17.25■□□□□ 0.35
LSM1-203ENST00000520755 UTP14CQ5TAP6 766 aaKnown RBP17.25■□□□□ 0.35
LSM1-203ENST00000520755 UBE2Q1Q7Z7E8 422 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 KRI1Q8N9T8 703 aaKnown RBP17.25■□□□□ 0.35
LSM1-203ENST00000520755 GLT1D1Q96MS3 346 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 GBP4Q96PP9 640 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 RIT2Q99578 217 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 MTG1Q9BT17 334 aaPredicted RBP17.25■□□□□ 0.35
LSM1-203ENST00000520755 TTC12Q9H892 705 aaPredicted RBP17.25■□□□□ 0.35
LSM1-203ENST00000520755 STARD7Q9NQZ5 370 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 ALPK3Q96L96 1907 aa17.25■□□□□ 0.35
LSM1-203ENST00000520755 SCN10AQ9Y5Y9 1956 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 GSTTP1A0A1W2PQM5 241 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 PP2D1A8MPX8 630 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 PPFIA4O75335 1185 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 TCF7P36402 384 aaPredicted RBP17.24■□□□□ 0.35
LSM1-203ENST00000520755 ATN1P54259 1190 aaPredicted RBP17.24■□□□□ 0.35
LSM1-203ENST00000520755 PSMC6P62333 389 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 PPP2R5CQ13362 524 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 IGSF22Q8N9C0 903 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 SEPT1Q8WYJ6 367 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 CSRNP2Q9H175 543 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 UNC45AQ9H3U1 944 aa17.24■□□□□ 0.35
LSM1-203ENST00000520755 MKI67P46013 3256 aaKnown RBP17.24■□□□□ 0.35
LSM1-203ENST00000520755 EML1O00423 815 aa17.23■□□□□ 0.35
LSM1-203ENST00000520755 GADD45BO75293 160 aaPredicted RBP17.23■□□□□ 0.35
LSM1-203ENST00000520755 CABYRO75952 493 aa17.23■□□□□ 0.35
LSM1-203ENST00000520755 LGALS2P05162 132 aa17.23■□□□□ 0.35
LSM1-203ENST00000520755 HOXD8P13378 290 aaPredicted RBP17.23■□□□□ 0.35
LSM1-203ENST00000520755 TECP42680 631 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms