RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 Q8N1Y9 231 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 SLC7A14Q8TBB6 771 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 CLUHP3Q96NS8 147 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 CARD11Q9BXL7 1154 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 CDIP1Q9H305 208 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 SLC52A2Q9HAB3 445 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 GULP1Q9UBP9 304 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 GPR160Q9UJ42 338 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 TRAF6Q9Y4K3 522 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 TIMM13Q9Y5L4 95 aaPredicted RBP9.48□□□□□ -0.89
SDCBP-208ENST00000520228 CDC42BPGQ6DT37 1551 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 NPHP3Q7Z494 1330 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 NALCNQ8IZF0 1738 aa9.48□□□□□ -0.89
SDCBP-208ENST00000520228 RFPL3O75679 317 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 PNLIPP16233 465 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 TCEA2Q15560 299 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 FNDC3BQ53EP0 1204 aaKnown RBP9.47□□□□□ -0.89
SDCBP-208ENST00000520228 NUP43Q8NFH3 380 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 CDK19Q9BWU1 502 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 PDLIM7Q9NR12 457 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 FBLN5Q9UBX5 448 aa9.47□□□□□ -0.89
SDCBP-208ENST00000520228 YBX2Q9Y2T7 364 aaKnown RBP9.47□□□□□ -0.89
SDCBP-208ENST00000520228 EIF3AQ14152 1382 aaKnown RBP9.47□□□□□ -0.89
SDCBP-208ENST00000520228 KNDC1Q76NI1 1749 aa9.46□□□□□ -0.89
SDCBP-208ENST00000520228 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.46□□□□□ -0.9
SDCBP-208ENST00000520228 BIN1O00499 593 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 GALK1P51570 392 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 GTF2A2P52657 109 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 RPL11P62913 178 aaKnown RBP9.46□□□□□ -0.9
SDCBP-208ENST00000520228 RBM10P98175 930 aaKnown RBP9.46□□□□□ -0.9
SDCBP-208ENST00000520228 LBX2Q6XYB7 198 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 NLRP10Q86W26 655 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 IFNL3Q8IZI9 196 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.46□□□□□ -0.9
SDCBP-208ENST00000520228 PLEKHO2Q8TD55 490 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 TRIM39Q9HCM9 518 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.46□□□□□ -0.92e-9■□□□□ 9.4
SDCBP-208ENST00000520228 PCDHA2Q9Y5H9 948 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 SPATA31A6Q5VVP1 1343 aa9.46□□□□□ -0.9
SDCBP-208ENST00000520228 AHDC1Q5TGY3 1603 aaPredicted RBP9.45□□□□□ -0.9
SDCBP-208ENST00000520228 AQP7O14520 342 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 EFCAB14O75071 495 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 JUNBP17275 347 aaPredicted RBP9.45□□□□□ -0.9
SDCBP-208ENST00000520228 BCL6P41182 706 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 IRAK1P51617 712 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 CYP4F8P98187 520 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 EGFLAMQ63HQ2 1017 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 KRT28Q7Z3Y7 464 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 ZSWIM9Q86XI8 627 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 SCLYQ96I15 445 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 FEZ1Q99689 392 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 SFMBT1Q9UHJ3 866 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 RWDD3Q9Y3V2 267 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 CD2APQ9Y5K6 639 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 GPRASP1Q5JY77 1395 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 ANKARQ7Z5J8 1434 aa9.45□□□□□ -0.9
SDCBP-208ENST00000520228 MYO1BO43795 1136 aa9.44□□□□□ -0.9
SDCBP-208ENST00000520228 GLI1P08151 1106 aa9.44□□□□□ -0.9
SDCBP-208ENST00000520228 LSAMPQ13449 338 aa9.44□□□□□ -0.9
SDCBP-208ENST00000520228 NGDNQ8NEJ9 315 aaKnown RBP9.44□□□□□ -0.9
SDCBP-208ENST00000520228 TNFRSF12AQ9NP84 129 aa9.44□□□□□ -0.9
SDCBP-208ENST00000520228 NDOR1Q9UHB4 597 aa9.44□□□□□ -0.9
SDCBP-208ENST00000520228 X6R8D5 127 aa9.44□□□□□ -0.9
SDCBP-208ENST00000520228 EVC2Q86UK5 1308 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 A0A1W2PQ27 194 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 A0A1W2PQ64 194 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 A0A1W2PQC6 194 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 A0A1W2PQD8 194 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.43□□□□□ -0.9
SDCBP-208ENST00000520228 ERVFRD-1P60508 538 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 PABPC4Q13310 644 aaKnown RBP eCLIP9.43□□□□□ -0.9
SDCBP-208ENST00000520228 MEX3CQ5U5Q3 659 aaKnown RBP9.43□□□□□ -0.9
SDCBP-208ENST00000520228 SIRT2Q8IXJ6 389 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 LZTR1Q8N653 840 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 MARCH2Q9P0N8 246 aa9.43□□□□□ -0.9
SDCBP-208ENST00000520228 KIAA1210Q9ULL0 1709 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 COL16A1Q07092 1604 aaPredicted RBP9.42□□□□□ -0.9
SDCBP-208ENST00000520228 RALGAPBQ86X10 1494 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 PNPLA6Q8IY17 1366 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 H7BY64 318 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 GLI4P10075 376 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 KCNMB1Q16558 191 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 KIZQ2M2Z5 673 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 CEP68Q76N32 757 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 BRAPQ7Z569 592 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 TEX2Q8IWB9 1127 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 INTS4Q96HW7 963 aaKnown RBP9.42□□□□□ -0.9
SDCBP-208ENST00000520228 PHLPP1O60346 1717 aa9.42□□□□□ -0.9
SDCBP-208ENST00000520228 ADGRB2O60241 1585 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 SPATA31A3Q5VYP0 1347 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 ZNF503-AS2A6NEH8 195 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 ARVCFO00192 962 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 CRTAMO95727 393 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 FUCA1P04066 466 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 FPR2P25090 351 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 TACR1P25103 407 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 DALRD3Q5D0E6 543 aaKnown RBP9.41□□□□□ -0.9
SDCBP-208ENST00000520228 FGD2Q7Z6J4 655 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 TMEM169Q96HH4 297 aa9.41□□□□□ -0.9
SDCBP-208ENST00000520228 PPARGC1AQ9UBK2 798 aaKnown RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms