RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 NUDT19A8MXV4 375 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 HRKO00198 91 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 AFF3P51826 1226 aaKnown RBP6.98□□□□□ -1.29
NUP54-218ENST00000515460 YBX1P67809 324 aaKnown RBP6.98□□□□□ -1.29
NUP54-218ENST00000515460 RAB3GAP1Q15042 981 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 OLFML2BQ68BL8 750 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 CRTC3Q6UUV7 619 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 CCDC144CPQ8IYA2 1237 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 RBBP8NLQ8NC74 664 aaPredicted RBP6.98□□□□□ -1.29
NUP54-218ENST00000515460 NUP43Q8NFH3 380 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 GPR101Q96P66 508 aaPredicted RBP6.98□□□□□ -1.29
NUP54-218ENST00000515460 KRTAP4-11Q9BYQ6 195 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 AP5S1Q9NUS5 200 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 ERVK13-1Q9NX77 482 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 NOP58Q9Y2X3 529 aaKnown RBP6.98□□□□□ -1.29
NUP54-218ENST00000515460 USP6P35125 1406 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 LAMA3Q16787 3333 aa6.98□□□□□ -1.29
NUP54-218ENST00000515460 LMO7Q8WWI1 1683 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 A0A0G2JLL6 359 aaPredicted RBP6.97□□□□□ -1.29
NUP54-218ENST00000515460 EXOC5O00471 708 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 BCL9O00512 1426 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 ABLIM1O14639 778 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 VAV1P15498 845 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 GUCY2CP25092 1073 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 BMP8BP34820 402 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 CDR1P51861 262 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 PMS1P54277 932 aaKnown RBP6.97□□□□□ -1.29
NUP54-218ENST00000515460 ERVFRD-1P60508 538 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 CYP4F8P98187 520 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 PAK2Q13177 524 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 CYP4F22Q6NT55 531 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 TMC6Q7Z403 805 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 FTSJ3Q8IY81 847 aaKnown RBP6.97□□□□□ -1.29
NUP54-218ENST00000515460 KCNH5Q8NCM2 988 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 MZB1Q8WU39 189 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 TTC28Q96AY4 2481 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 DACT3Q96B18 629 aaPredicted RBP6.97□□□□□ -1.29
NUP54-218ENST00000515460 DSCC1Q9BVC3 393 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 EPB41L4AQ9HCS5 686 aaPredicted RBP6.97□□□□□ -1.29
NUP54-218ENST00000515460 UNC79Q9P2D8 2635 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 KLHL14Q9P2G3 628 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 PPT2Q9UMR5 302 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 KAT6BQ8WYB5 2073 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 AKAP12Q02952 1782 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 EVC2Q86UK5 1308 aa6.97□□□□□ -1.29
NUP54-218ENST00000515460 PPM1GO15355 546 aaPredicted RBP6.96□□□□□ -1.3
NUP54-218ENST00000515460 FOXD2O60548 495 aaPredicted RBP6.96□□□□□ -1.3
NUP54-218ENST00000515460 ZNF205O95201 554 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 ACRP10323 421 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 NCKAP1LP55160 1127 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 LAPTM5Q13571 262 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 SLCO6A1Q86UG4 719 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 METTL16Q86W50 562 aaKnown RBP6.96□□□□□ -1.3
NUP54-218ENST00000515460 C7orf61Q8IZ16 206 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 GPRASP2Q96D09 838 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 CAPNS2Q96L46 248 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 ABT1Q9ULW3 272 aaKnown RBP6.96□□□□□ -1.3
NUP54-218ENST00000515460 SLC12A7Q9Y666 1083 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 BTAF1O14981 1849 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 SBF1O95248 1867 aa6.96□□□□□ -1.3
NUP54-218ENST00000515460 ADAMTS20P59510 1910 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQ27 194 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQ64 194 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQC6 194 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQD8 194 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 C9IYK1 514 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 SASH1O94885 1247 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 GSTM1P09488 218 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 CWF19L1Q69YN2 538 aaKnown RBP6.95□□□□□ -1.3
NUP54-218ENST00000515460 CNKSR3Q6P9H4 555 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 LDHDQ86WU2 507 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 LSRQ86X29 649 aaPredicted RBP6.95□□□□□ -1.3
NUP54-218ENST00000515460 NT5DC4Q86YG4 428 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 ZDHHC14Q8IZN3 488 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 IMPACTQ9P2X3 320 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.95□□□□□ -1.3
NUP54-218ENST00000515460 SLIT3O75094 1523 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 TTC21AQ8NDW8 1320 aa6.95□□□□□ -1.3
NUP54-218ENST00000515460 CPSF1Q10570 1443 aaKnown RBP6.94□□□□□ -1.3
NUP54-218ENST00000515460 KIAA1551Q9HCM1 1747 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQ45 241 aaPredicted RBP6.94□□□□□ -1.3
NUP54-218ENST00000515460 A0A1W2PQY0 241 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 GSNP06396 782 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 DPEP1P16444 411 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 EIF6P56537 245 aaKnown RBP6.94□□□□□ -1.3
NUP54-218ENST00000515460 LCE5AQ5TCM9 118 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 TDRD10Q5VZ19 366 aaKnown RBP6.94□□□□□ -1.3
NUP54-218ENST00000515460 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.94□□□□□ -1.3
NUP54-218ENST00000515460 TMEFF1Q8IYR6 380 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 NAT16Q8N8M0 369 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 TMEM52Q8NDY8 209 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 OR6P1Q8NGX9 317 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 FEZF2Q8TBJ5 459 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 RASGRP4Q8TDF6 673 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 JMJD8Q96S16 334 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 GINM1Q9NU53 330 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 FAM86C1Q9NVL1 165 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 EFR3BQ9Y2G0 817 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 LAMB4A4D0S4 1761 aa6.94□□□□□ -1.3
NUP54-218ENST00000515460 NHSQ6T4R5 1651 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms