RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 COL4A2P08572 1712 aa4.09□□□□□ -1.76
TCOF1-208ENST00000506063 COL5A1P20908 1838 aaPredicted RBP4.09□□□□□ -1.76
TCOF1-208ENST00000506063 DOCK5Q9H7D0 1870 aa4.09□□□□□ -1.76
TCOF1-208ENST00000506063 WDR81Q562E7 1941 aa4.09□□□□□ -1.76
TCOF1-208ENST00000506063 MTCL1Q9Y4B5 1905 aaKnown RBP4.09□□□□□ -1.76
TCOF1-208ENST00000506063 SHISA7A6NL88 538 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 STK25O00506 426 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 MPHOSPH10O00566 681 aaKnown RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 ENPP3O14638 875 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 LAMTOR5O43504 91 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 VAMP4O75379 141 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 F2P00734 622 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 SRFP11831 508 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 EDNRBP24530 442 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 PDE4AP27815 886 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 GATMP50440 423 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 OAZ1P54368 228 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 UBE3AQ05086 875 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 ZNF252P-AS1Q0IIN9 211 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 APOBRQ0VD83 1088 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 SF3A2Q15428 464 aaKnown RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 MUM1L1Q5H9M0 696 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 STPG1Q5TH74 334 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 XRRA1Q6P2D8 792 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 CCDC62Q6P9F0 684 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 TTC6Q86TZ1 520 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 RTN4RL1Q86UN2 441 aaPredicted RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 ZNF843Q8N446 348 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 SLC44A3Q8N4M1 653 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 PRPF38AQ8NAV1 312 aaKnown RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 AFG1LQ8WV93 481 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 CRELD1Q96HD1 420 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 NOTCH4Q99466 2003 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 USP44Q9H0E7 712 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 ACAD9Q9H845 621 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 EHMT1Q9H9B1 1298 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 ARHGEF10LQ9HCE6 1279 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 HOMER2Q9NSB8 354 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 SPATA6Q9NWH7 488 aaPredicted RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 CYP39A1Q9NYL5 469 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 IGSF9Q9P2J2 1179 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 HCSTQ9UBK5 93 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 KLK13Q9UKR3 277 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 KIF26AQ9ULI4 1882 aaPredicted RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 PA2G4Q9UQ80 394 aaKnown RBP4.08□□□□□ -1.76
TCOF1-208ENST00000506063 MSRB2Q9Y3D2 182 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 NEUROG3Q9Y4Z2 214 aa4.08□□□□□ -1.76
TCOF1-208ENST00000506063 AHCTF1Q8WYP5 2266 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PI4KAP42356 2102 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 FAM221BA6H8Z2 402 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 J3QKU1 62 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 TK2O00142 265 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 NKRFO15226 690 aaKnown RBP eCLIP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 HRO43593 1189 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PPFIA3O75145 1194 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 FGF18O76093 207 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 NDUFB10O96000 172 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CYP2E1P05181 493 aaPredicted RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CYP2D6P10635 497 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 THPOP40225 353 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 IL15P40933 162 aaPredicted RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 SLC4A3P48751 1232 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PSEN2P49810 448 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 NOVA1P51513 510 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 ALDH5A1P51649 535 aaPredicted RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CHMP4BP1P59074 171 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 ATP8B2P98198 1209 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 ARHGAP1Q07960 439 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 MVPQ14764 893 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PPP2R5BQ15173 497 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CCDC27Q2M243 656 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 TPRNQ4KMQ1 711 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 FAM26DQ5JW98 314 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 RARS2Q5T160 578 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PLPP4Q5VZY2 271 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PDE12Q6L8Q7 609 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CES5AQ6NT32 575 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 ZNF687Q8N1G0 1237 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 LRRC47Q8N1G4 583 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CELF5Q8N6W0 485 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 ZNF513Q8N8E2 541 aaPredicted RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 MIGA1Q8NAN2 632 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CASP10Q92851 521 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 APBB2Q92870 758 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 CLDN23Q96B33 292 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 DYNLL2Q96FJ2 89 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 RIOK1Q9BRS2 568 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 NOL10Q9BSC4 688 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 SH2D4AQ9H788 454 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 PIH1D3Q9NQM4 214 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 SLC2A4RGQ9NR83 387 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 RNF146Q9NTX7 359 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 KCNK4Q9NYG8 393 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 LRP2BPQ9P2M1 347 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 DBR1Q9UK59 544 aaKnown RBP4.07□□□□□ -1.76
TCOF1-208ENST00000506063 COG6Q9Y2V7 657 aa4.07□□□□□ -1.76
TCOF1-208ENST00000506063 GOLGA4Q13439 2230 aaKnown RBP4.06□□□□□ -1.76
TCOF1-208ENST00000506063 CACNA1DQ01668 2161 aa4.06□□□□□ -1.76
TCOF1-208ENST00000506063 FRMPD2Q68DX3 1309 aaPredicted RBP4.06□□□□□ -1.76
TCOF1-208ENST00000506063 RAD50Q92878 1312 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms