RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NT5DC4Q86YG4 428 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 GPRASP2Q96D09 838 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 NBPF4Q96M43 638 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 CDADC1Q9BWV3 514 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.42□□□□□ -1.54
USP54-217ENST00000498213 STXBP5LQ9Y2K9 1186 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 TTC28Q96AY4 2481 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 CGNL1Q0VF96 1302 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 PCDH11XQ9BZA7 1347 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 PCDH11YQ9BZA8 1340 aa5.42□□□□□ -1.54
USP54-217ENST00000498213 SCN4AP35499 1836 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 FBLN1P23142 703 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 GUCY2CP25092 1073 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 PMS1P54277 932 aaKnown RBP5.41□□□□□ -1.54
USP54-217ENST00000498213 SNX17Q15036 470 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 BBS9Q3SYG4 887 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 RGMBQ6NW40 437 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 OLFM4Q6UX06 510 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 C7orf61Q8IZ16 206 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 GPC2Q8N158 579 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 TAB3Q8N5C8 712 aaPredicted RBP5.41□□□□□ -1.54
USP54-217ENST00000498213 CPLX3Q8WVH0 158 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 MAP6Q96JE9 813 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 CCSER2Q9H7U1 834 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 FAM86C1Q9NVL1 165 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 MINPP1Q9UNW1 487 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 EFR3BQ9Y2G0 817 aa5.41□□□□□ -1.54
USP54-217ENST00000498213 TCAF2A6NFQ2 919 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 FZD9O00144 591 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 TP53P04637 393 aaPredicted RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 ACRP10323 421 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 KIR2DL1P43626 348 aaPredicted RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 KIR2DL2P43627 348 aaPredicted RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 EIF6P56537 245 aaKnown RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 TIGD5Q53EQ6 642 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 USP50Q70EL3 339 aaPredicted RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 ZNF605Q86T29 641 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 LSRQ86X29 649 aaPredicted RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 IRF2BP1Q8IU81 584 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 NAT16Q8N8M0 369 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 DPF3Q92784 378 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 INTS4Q96HW7 963 aaKnown RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 FCRL2Q96LA5 508 aaPredicted RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 KCNK12Q9HB15 430 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 GINM1Q9NU53 330 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 PRR13Q9NZ81 148 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 YBX2Q9Y2T7 364 aaKnown RBP5.4□□□□□ -1.54
USP54-217ENST00000498213 SLC12A7Q9Y666 1083 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 TAF6LQ9Y6J9 622 aa5.4□□□□□ -1.54
USP54-217ENST00000498213 KIAA0100Q14667 2235 aaKnown RBP5.4□□□□□ -1.55
USP54-217ENST00000498213 KIF24Q5T7B8 1368 aa5.4□□□□□ -1.55
USP54-217ENST00000498213 SPTBN5Q9NRC6 3674 aaKnown RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 C9IYK1 514 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 GSNP06396 782 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 BMP8BP34820 402 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 BUD31P41223 144 aaPredicted RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 CRKLP46109 303 aaKnown RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 AMPHP49418 695 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 HDLBPQ00341 1268 aaKnown RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 KCNA10Q16322 511 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 CRTC3Q6UUV7 619 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 UNC5AQ6ZN44 842 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 ATG14Q6ZNE5 492 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 RUFY4Q6ZNE9 571 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 METTL16Q86W50 562 aaKnown RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 SIRT2Q8IXJ6 389 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 RBBP8NLQ8NC74 664 aaPredicted RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 LINC01599Q8WXQ3 324 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 KRTAP17-1Q9BYP8 105 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 INSRP06213 1382 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 KTN1Q86UP2 1357 aaKnown RBP5.39□□□□□ -1.55
USP54-217ENST00000498213 CD163L1Q9NR16 1453 aa5.39□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQ27 194 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQ64 194 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQC6 194 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 A0A1W2PQD8 194 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 TMEM82A0PJX8 343 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 WTIPA6NIX2 430 aaPredicted RBP5.38□□□□□ -1.55
USP54-217ENST00000498213 PSPNO60542 156 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 INHBBP09529 407 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 ITGA4P13612 1032 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 HOXC9P31274 260 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 IARSP41252 1262 aaKnown RBP5.38□□□□□ -1.55
USP54-217ENST00000498213 RTP1P59025 263 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 TCEAL1Q15170 157 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 PPP2R5EQ16537 467 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 ADGRF1Q5T601 910 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 DCAF15Q66K64 600 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 ZPBP2Q6X784 338 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 OR6P1Q8NGX9 317 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 KCNN1Q92952 543 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 G6PC3Q9BUM1 346 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 SRRTQ9BXP5 876 aaKnown RBP5.38□□□□□ -1.55
USP54-217ENST00000498213 PRO3102Q9H379 93 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 CD320Q9NPF0 282 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 MTMR10Q9NXD2 777 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 TERF2IPQ9NYB0 399 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 TNFRSF10DQ9UBN6 386 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 EBF1Q9UH73 591 aa5.38□□□□□ -1.55
USP54-217ENST00000498213 INPP5FQ9Y2H2 1132 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms