RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RHCEP18577 417 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 AMY2BP19961 511 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 AKAP5P24588 427 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 PPM1FP49593 454 aaPredicted RBP5.83□□□□□ -1.48
VPS13A-212ENST00000493341 GTF2A2P52657 109 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 SNRPNP63162 240 aaKnown RBP5.83□□□□□ -1.48
VPS13A-212ENST00000493341 RHDQ02161 417 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 ANGEL2Q5VTE6 544 aaKnown RBP5.83□□□□□ -1.48
VPS13A-212ENST00000493341 CDKAL1Q5VV42 579 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 CPZQ66K79 652 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 SPTY2D1Q68D10 685 aaPredicted RBP5.83□□□□□ -1.48
VPS13A-212ENST00000493341 FSTL4Q6MZW2 842 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 FRMD7Q6ZUT3 714 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 CHST15Q7LFX5 561 aaPredicted RBP5.83□□□□□ -1.48
VPS13A-212ENST00000493341 FAM186BQ8IYM0 893 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 ZBTB34Q8NCN2 500 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 IRF7Q92985 503 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 HEXIM2Q96MH2 286 aaKnown RBP5.83□□□□□ -1.48
VPS13A-212ENST00000493341 KLHL11Q9NVR0 708 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 CAPN6Q9Y6Q1 641 aa5.83□□□□□ -1.48
VPS13A-212ENST00000493341 WTIPA6NIX2 430 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 GNAT3A8MTJ3 354 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 SCDO00767 359 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 ZNF865P0CJ78 1059 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 SRFP11831 508 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 AK2P54819 239 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 STK3Q13188 491 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 GPR19Q15760 415 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 PAOXQ6QHF9 649 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 TOGARAM2Q6ZUX3 1019 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 FAM214BQ7L5A3 538 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 GRAMD1CQ8IYS0 662 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 CAMKK1Q8N5S9 505 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 LINC00116Q8NCU8 138 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 MYRFLQ96LU7 910 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 NAA15Q9BXJ9 866 aaKnown RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 TRIT1Q9H3H1 467 aaKnown RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 TCRBV5S4A2TA0A5A2 114 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 A6NNZ2 444 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 GNB5O14775 395 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 NKRFO15226 690 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 IREB2P48200 963 aaKnown RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 SRSF2Q01130 221 aaKnown RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 SPIRE1Q08AE8 756 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 LONRF1Q17RB8 773 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 TMEM95Q3KNT9 176 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 HHIPL2Q6UWX4 724 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 LINC00114Q6XXX2 140 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 CCDC149Q6ZUS6 474 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 IFNL2Q8IZJ0 200 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 WHAMMQ8TF30 809 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 ZNF496Q96IT1 587 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 MYD88Q99836 296 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 GTPBP4Q9BZE4 634 aaKnown RBP5.82□□□□□ -1.48
VPS13A-212ENST00000493341 FAM204AQ9H8W3 233 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 MSRAQ9UJ68 235 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 PTPN22Q9Y2R2 807 aa5.82□□□□□ -1.48
VPS13A-212ENST00000493341 TERTO14746 1132 aaKnown RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 NBNO60934 754 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 FPR2P25090 351 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 GJA9P57773 515 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 IRX6P78412 446 aaPredicted RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 POU5F1BQ06416 359 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 TMEM132BQ14DG7 1078 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 TOR2AQ5JU69 321 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 XRRA1Q6P2D8 792 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 LILRA6Q6PI73 481 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 PPM1NQ8N819 430 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 FAM156AQ8NDB6 213 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 RTF1Q92541 710 aaKnown RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 TRMT2BQ96GJ1 504 aaKnown RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 MAP3K14Q99558 947 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 ZMAT4Q9H898 229 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 EDARQ9UNE0 448 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 POU2F2P09086 479 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 C5AR1P21730 350 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 CD40P25942 277 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 IFI16Q16666 785 aaKnown RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 UAP1L1Q3KQV9 507 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 ATAT1Q5SQI0 421 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 ZPBP2Q6X784 338 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 Q6ZS46 218 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 SRGAP1Q7Z6B7 1085 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 TSPYL5Q86VY4 417 aaPredicted RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 NLRP10Q86W26 655 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 TEX2Q8IWB9 1127 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 SIRT2Q8IXJ6 389 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 DIS3LQ8TF46 1054 aaKnown RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 DPF3Q92784 378 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 LENG1Q96BZ8 264 aaPredicted RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 ACAP3Q96P50 834 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 ANO3Q9BYT9 981 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 QRSL1Q9H0R6 528 aaKnown RBP5.81□□□□□ -1.48
VPS13A-212ENST00000493341 MARCH2Q9P0N8 246 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 KCNG1Q9UIX4 513 aa5.81□□□□□ -1.48
VPS13A-212ENST00000493341 NPHS1O60500 1241 aa5.8□□□□□ -1.48
VPS13A-212ENST00000493341 SETSIPP0DME0 302 aa5.8□□□□□ -1.48
VPS13A-212ENST00000493341 CD53P19397 219 aa5.8□□□□□ -1.48
VPS13A-212ENST00000493341 AGXTP21549 392 aa5.8□□□□□ -1.48
VPS13A-212ENST00000493341 NOS3P29474 1203 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms