RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 RNF113AO15541 343 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 TTI1O43156 1089 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 TUFMP49411 452 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ITGA7Q13683 1181 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 MYCBPAPQ8TBZ2 947 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 SUN5Q8TC36 379 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ZC3H15Q8WU90 426 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 CYTH2Q99418 400 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 SLC39A3Q9BRY0 314 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 MMTAG2Q9BU76 263 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 C10orf88Q9H8K7 445 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 A0A087WWV3 80 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 NFKBIAP25963 317 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 PAK1Q13153 545 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 DAB2IPQ5VWQ8 1189 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 C1orf228Q6PIY5 440 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ANGPTL8Q6UXH0 198 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 SESTD1Q86VW0 696 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 BBOF1Q8ND07 529 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 GDAP1Q8TB36 358 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 SNX29Q8TEQ0 813 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 NSD3Q9BZ95 1437 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 FHDC1Q9C0D6 1143 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 DCTPP1Q9H773 170 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ETNK1Q9HBU6 452 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 PCDHGC5Q9Y5F6 944 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 H3BRJ5 948 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 SLC26A4O43511 780 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 TXKP42681 527 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ZBED6P86452 979 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 FOXD4Q12950 439 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGAP44Q17R89 818 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 CCSAPQ6IQ19 270 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 BTN2A1Q7KYR7 527 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGEF25Q86VW2 580 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 TRIM59Q8IWR1 403 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 KIF2BQ8N4N8 673 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 RUBCNQ92622 972 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ACSBG1Q96GR2 724 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 DHRS1Q96LJ7 313 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 PANX2Q96RD6 677 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ZNF212Q9UDV6 495 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 CIDEBQ9UHD4 219 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 DSEQ9UL01 958 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 NFU1Q9UMS0 254 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 PACSIN2Q9UNF0 486 aaPredicted RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 TMED5Q9Y3A6 229 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 OPLAHO14841 1288 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ATP9AO75110 1047 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SLC4A1P02730 911 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 PMS2P54278 862 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 PNOCQ13519 176 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ZYXQ15942 572 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CDC37Q16543 378 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ATG16L1Q676U5 607 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 NSMFQ6X4W1 530 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 GALNT15Q8N3T1 639 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 RHPN1Q8TCX5 695 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TRIM15Q9C019 465 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 MLXIPQ9HAP2 919 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SLC12A6Q9UHW9 1150 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 NFE2L3Q9Y4A8 694 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 FAM135AQ9P2D6 1515 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 KDRP35968 1356 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 PI4KAP2A4QPH2 592 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 PHF20L1A8MW92 1017 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 IKBKBO14920 756 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 THAP12O43422 761 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SPAG7O75391 227 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CYP11B2P19099 503 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 HERC4Q5GLZ8 1057 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ANO5Q75V66 913 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 PI4KAP1Q8N8J0 262 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 OR8K1Q8NGG5 319 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TTC25Q96NG3 672 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TUBB6Q9BUF5 446 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ANKZF1Q9H8Y5 726 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 GID8Q9NWU2 228 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CPSF3Q9UKF6 684 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 LRFN2Q9ULH4 789 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 L1RE1Q9UN81 338 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 UHRF1BP1LA0JNW5 1464 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 LGR5O75473 907 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CD151P48509 253 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SERPINB8P50452 374 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CCDC153Q494R4 210 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ZNF394Q53GI3 561 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TMTC3Q6ZXV5 915 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TRMT10CQ7L0Y3 403 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TRPM8Q7Z2W7 1104 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 STX19Q8N4C7 294 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TCEANC2Q96MN5 208 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 GCNAQ96QF7 691 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 BRD8Q9H0E9 1235 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 COG4Q9H9E3 785 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 GGT7Q9UJ14 662 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SUGT1Q9Y2Z0 365 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ADCY7P51828 1080 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 PPP2R5EQ16537 467 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CRELD2Q6UXH1 353 aaPredicted RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms