RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 ZDHHC14Q8IZN3 488 aa13.59□□□□□ -0.23
HDAC6-233ENST00000489352 ARHGAP45Q92619 1136 aa13.59□□□□□ -0.23
HDAC6-233ENST00000489352 EMID1Q96A84 441 aaPredicted RBP13.59□□□□□ -0.23
HDAC6-233ENST00000489352 RANBP17Q9H2T7 1088 aaKnown RBP13.59□□□□□ -0.23
HDAC6-233ENST00000489352 ERVK-5Q9HDB9 667 aa13.59□□□□□ -0.23
HDAC6-233ENST00000489352 DBR1Q9UK59 544 aaKnown RBP13.59□□□□□ -0.23
HDAC6-233ENST00000489352 STX8Q9UNK0 236 aa13.59□□□□□ -0.23
HDAC6-233ENST00000489352 NOP58Q9Y2X3 529 aaKnown RBP13.59□□□□□ -0.23
HDAC6-233ENST00000489352 MRVI1Q9Y6F6 885 aa13.59□□□□□ -0.23
HDAC6-233ENST00000489352 SP9P0CG40 484 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 STAG3L1P0CL83 205 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 GHRP10912 638 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 KCNA4P22459 653 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 TBC1D8BQ0IIM8 1120 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 SPECC1Q5M775 1068 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 ZSCAN25Q6NSZ9 544 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 BCL11AQ9H165 835 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 PAG1Q9NWQ8 432 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 TMEM260Q9NX78 707 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 DDX41Q9UJV9 622 aaKnown RBP13.58□□□□□ -0.24
HDAC6-233ENST00000489352 ANGPTL2Q9UKU9 493 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 USP18Q9UMW8 372 aa13.58□□□□□ -0.24
HDAC6-233ENST00000489352 SLC16A2P36021 539 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 TFAP4Q01664 338 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 TDGQ13569 410 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 PLPP4Q5VZY2 271 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 THNSL1Q8IYQ7 743 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 FAM9BQ8IZU0 186 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 SUMF1Q8NBK3 374 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 NEDD1Q8NHV4 660 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 NSUN6Q8TEA1 469 aaKnown RBP13.57□□□□□ -0.24
HDAC6-233ENST00000489352 CASP10Q92851 521 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 ACSF2Q96CM8 615 aaPredicted RBP13.57□□□□□ -0.24
HDAC6-233ENST00000489352 SPATA33Q96N06 139 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 ADAM7Q9H2U9 754 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 ENTPD7Q9NQZ7 604 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 CYP26B1Q9NR63 512 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 PUF60Q9UHX1 559 aaKnown RBP13.57□□□□□ -0.24
HDAC6-233ENST00000489352 LRFN2Q9ULH4 789 aa13.57□□□□□ -0.24
HDAC6-233ENST00000489352 H3BRB1 525 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 IPO8O15397 1037 aaKnown RBP13.56□□□□□ -0.24
HDAC6-233ENST00000489352 APPP05067 770 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 SLC3A2P08195 630 aaKnown RBP13.56□□□□□ -0.24
HDAC6-233ENST00000489352 SMIM10L2AP0DMW4 78 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 SMIM10L2BP0DMW5 78 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 TDO2P48775 406 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 ERVFC1P60507 584 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 UBE3CQ15386 1083 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 SYDE2Q5VT97 1194 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 GIMAP6Q6P9H5 292 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 NPAS4Q8IUM7 802 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 RASGRP4Q8TDF6 673 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 CLEC4DQ8WXI8 215 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 BORCS6Q96GS4 357 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 IWS1Q96ST2 819 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 RNPEPQ9H4A4 650 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 TUT1Q9H6E5 874 aaKnown RBP13.56□□□□□ -0.24
HDAC6-233ENST00000489352 CDH22Q9UJ99 828 aa13.56□□□□□ -0.24
HDAC6-233ENST00000489352 SOBPA7XYQ1 873 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 SORBS3O60504 671 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 FGF18O76093 207 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 IFIT2P09913 472 aaKnown RBP13.55□□□□□ -0.24
HDAC6-233ENST00000489352 CT47B1P0C2W7 299 aaPredicted RBP13.55□□□□□ -0.24
HDAC6-233ENST00000489352 SLFN5Q08AF3 891 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 FAM26DQ5JW98 314 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 ATAT1Q5SQI0 421 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 C1orf210Q8IVY1 113 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 PUS7LQ9H0K6 701 aaKnown RBP13.55□□□□□ -0.24
HDAC6-233ENST00000489352 USTQ9Y2C2 406 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 ZFYVE26Q68DK2 2539 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 CACNA1IQ9P0X4 2223 aa13.55□□□□□ -0.24
HDAC6-233ENST00000489352 GCN1Q92616 2671 aaKnown RBP13.55□□□□□ -0.24
HDAC6-233ENST00000489352 EIF3JO75822 258 aaKnown RBP13.54□□□□□ -0.24
HDAC6-233ENST00000489352 ARP10275 920 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 IBSPP21815 317 aaPredicted RBP13.54□□□□□ -0.24
HDAC6-233ENST00000489352 ARHGEF16Q5VV41 709 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 RSPH3Q86UC2 560 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 DCAF4Q8WV16 495 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 ATRIPQ8WXE1 791 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 TCF25Q9BQ70 676 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 IL1RAPL2Q9NP60 686 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 SETD4Q9NVD3 440 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 DUSP12Q9UNI6 340 aa13.54□□□□□ -0.24
HDAC6-233ENST00000489352 GSG1L2A8MUP6 293 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 DCNP07585 359 aaKnown RBP13.53□□□□□ -0.24
HDAC6-233ENST00000489352 WEE2P0C1S8 567 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 ARHGAP4P98171 946 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 KCNC3Q14003 757 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 HSDL1Q3SXM5 330 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 USH1GQ495M9 461 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 TTBK2Q6IQ55 1244 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 XRRA1Q6P2D8 792 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 KCNV1Q6PIU1 500 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 CLASRPQ8N2M8 674 aaKnown RBP13.53□□□□□ -0.24
HDAC6-233ENST00000489352 TMEM87AQ8NBN3 555 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 STRBPQ96SI9 672 aaKnown RBP13.53□□□□□ -0.24
HDAC6-233ENST00000489352 RMDN3Q96TC7 470 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 C16orf70Q9BSU1 422 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 BOLA2Q9H3K6 86 aa13.53□□□□□ -0.24
HDAC6-233ENST00000489352 MLXIPQ9HAP2 919 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms