RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 MTMR7Q9Y216 660 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 PCDHB9Q9Y5E1 797 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 EP300Q09472 2414 aaPredicted RBP6.29□□□□□ -1.4
PTPN4-209ENST00000469511 MYH6P13533 1939 aa6.29□□□□□ -1.4
PTPN4-209ENST00000469511 MYO15AQ9UKN7 3530 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 TPRP12270 2363 aaKnown RBP6.28□□□□□ -1.4
PTPN4-209ENST00000469511 H3BNC9 293 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 STXBP3O00186 592 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 GRM6O15303 877 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 NMT2O60551 498 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 UPP2O95045 317 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 LINC00271P0C7V0 271 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 SLC16A2P36021 539 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 HTRA4P83105 476 aaPredicted RBP6.28□□□□□ -1.4
PTPN4-209ENST00000469511 RBM10P98175 930 aaKnown RBP6.28□□□□□ -1.4
PTPN4-209ENST00000469511 CEP85Q6P2H3 762 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 PLEKHM2Q8IWE5 1019 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 MYOCDQ8IZQ8 938 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 GMCL1P1Q8NEA9 526 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 AFAP1L1Q8TED9 768 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 AFG1LQ8WV93 481 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 STAG1Q8WVM7 1258 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 TBC1D5Q92609 795 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 STRBPQ96SI9 672 aaKnown RBP6.28□□□□□ -1.4
PTPN4-209ENST00000469511 CRBNQ96SW2 442 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 ALG1Q9BT22 464 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 IGFLR1Q9H665 355 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 MKNK2Q9HBH9 465 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 PAG1Q9NWQ8 432 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 PRKAG3Q9UGI9 489 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 NOD1Q9Y239 953 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 DCHS1Q96JQ0 3298 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 DMDP11532 3685 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 SPTBN2O15020 2390 aa6.28□□□□□ -1.4
PTPN4-209ENST00000469511 KAT6AQ92794 2004 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 ABHD14A-ACY1A0A1B0GW23 586 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 MED19A0JLT2 244 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 PIK3CDO00329 1044 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CT47B1P0C2W7 299 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 TXNP10599 105 aaKnown RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CALML3P27482 149 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 AVPR2P30518 371 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CPT1AP50416 773 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 STAT2P52630 851 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 ZXDAP98168 799 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 PTPN11Q06124 597 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 ARHGAP1Q07960 439 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CAMK1Q14012 370 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 IKBKEQ14164 716 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 AGERQ15109 404 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 LY6KQ17RY6 165 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 LRRFIP1Q32MZ4 808 aaKnown RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 SBK1Q52WX2 424 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 TMED8Q6PL24 325 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CHST3Q7LGC8 479 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 ADGRD2Q7Z7M1 963 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 TMEM192Q8IY95 271 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 FBXL6Q8N531 539 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CLEC4DQ8WXI8 215 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 ATOH1Q92858 354 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 OSBP2Q969R2 916 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 ASIC4Q96FT7 647 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 NSUN3Q9H649 340 aaKnown RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 IL17RBQ9NRM6 502 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CDV3Q9UKY7 258 aaKnown RBP6.27□□□□□ -1.41
PTPN4-209ENST00000469511 CCPG1Q9ULG6 757 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 INSL6Q9Y581 213 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 NCOR2Q9Y618 2525 aa6.27□□□□□ -1.41
PTPN4-209ENST00000469511 TTC3P53804 2025 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 EPG5Q9HCE0 2579 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 PTPDC1A2A3K4 754 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 M0R2C6 588 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 LZTS3O60299 673 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 SORBS3O60504 671 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 CD2BP2O95400 341 aaKnown RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 TTLL1O95922 423 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 MMP3P08254 477 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 RFX1P22670 979 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 DNAJB1P25685 340 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 VARSP26640 1264 aaKnown RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 SLC1A4P43007 532 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 TFAP4Q01664 338 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 RBL2Q08999 1139 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 IKQ13123 557 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 PPP2R5BQ15173 497 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 UBE3CQ15386 1083 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 TKFCQ3LXA3 575 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 TIGD5Q53EQ6 642 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 RCSD1Q6JBY9 416 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 CCDC62Q6P9F0 684 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 FBXO11Q86XK2 927 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 SIRT2Q8IXJ6 389 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 RPAP2Q8IXW5 612 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 ZNF444Q8N0Y2 327 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-209ENST00000469511 NEDD1Q8NHV4 660 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 FAM174AQ8TBP5 190 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 CAGE1Q8TC20 777 aa6.26□□□□□ -1.41
PTPN4-209ENST00000469511 MSLNLQ96KJ4 702 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms