RNA–Protein interactions for RNA: ENST00000454542.5

HDAC4-205, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-205ENST00000454542 GDF6Q6KF10 455 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-205ENST00000454542 DIS3L2Q8IYB7 885 aaKnown RBP16.09■□□□□ 0.17
HDAC4-205ENST00000454542 PPP1R13LQ8WUF5 828 aa16.09■□□□□ 0.17
HDAC4-205ENST00000454542 SEPT1Q8WYJ6 367 aa16.09■□□□□ 0.17
HDAC4-205ENST00000454542 TUT1Q9H6E5 874 aaKnown RBP16.09■□□□□ 0.17
HDAC4-205ENST00000454542 BRMS1Q9HCU9 246 aa16.09■□□□□ 0.17
HDAC4-205ENST00000454542 HDAC6Q9UBN7 1215 aa16.09■□□□□ 0.17
HDAC4-205ENST00000454542 ZNF215Q9UL58 517 aaPredicted RBP16.09■□□□□ 0.17
HDAC4-205ENST00000454542 IGKV6D-21A0A0A0MT36 114 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 CCDC194A0A1B0GVG4 234 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 FAM205CA6NFA0 338 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 MSH4O15457 936 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 SUPT20HL2P0C7V6 817 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 RAG1P15918 1043 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 ACTR2P61160 394 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 MDM2Q00987 491 aaPredicted RBP16.08■□□□□ 0.16
HDAC4-205ENST00000454542 SP4Q02446 784 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 HIC1Q14526 733 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 FAM47CQ5HY64 1035 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 PPP4R3AQ6IN85 833 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 B3GNT9Q6UX72 402 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 NEK8Q86SG6 692 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 ETNPPLQ8TBG4 499 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 SLC5A5Q92911 643 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 BADQ92934 168 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 ZNF577Q9BSK1 485 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 TBC1D22BQ9NU19 505 aa16.08■□□□□ 0.16
HDAC4-205ENST00000454542 LAMA3Q16787 3333 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 GCFC2P16383 781 aaKnown RBP16.07■□□□□ 0.16
HDAC4-205ENST00000454542 ADAM17P78536 824 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 MFSD5Q6N075 450 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 ZNF746Q6NUN9 644 aaPredicted RBP16.07■□□□□ 0.16
HDAC4-205ENST00000454542 ABHD15Q6UXT9 468 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 PIK3AP1Q6ZUJ8 805 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 FBXO18Q8NFZ0 1043 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 DHX38Q92620 1227 aaKnown RBP16.07■□□□□ 0.16
HDAC4-205ENST00000454542 C8orf76Q96K31 380 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 RIT2Q99578 217 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 WNT8AQ9H1J5 351 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 HIPK3Q9H422 1215 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 KCNMB3Q9NPA1 279 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 UMODL1Q5DID0 1318 aa16.07■□□□□ 0.16
HDAC4-205ENST00000454542 TRIP12Q14669 1992 aaPredicted RBP16.06■□□□□ 0.16
HDAC4-205ENST00000454542 IGSF9BQ9UPX0 1349 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 BTBD18B2RXH4 712 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 PITPNM1O00562 1244 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 SLC37A4O43826 429 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 SMIM10L2AP0DMW4 78 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 SMIM10L2BP0DMW5 78 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 CYP2C9P11712 490 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 FOSBP53539 338 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 KRT76Q01546 638 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 CUL4AQ13619 759 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 TRIM29Q14134 588 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 UTP14CQ5TAP6 766 aaKnown RBP16.06■□□□□ 0.16
HDAC4-205ENST00000454542 SMAP1Q8IYB5 467 aaPredicted RBP16.06■□□□□ 0.16
HDAC4-205ENST00000454542 C7orf31Q8N865 590 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 AFAP1L1Q8TED9 768 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 LBHD1Q9BQE6 289 aaPredicted RBP16.06■□□□□ 0.16
HDAC4-205ENST00000454542 ERAP1Q9NZ08 941 aa16.06■□□□□ 0.16
HDAC4-205ENST00000454542 PSMD10O75832 226 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 PTGISQ16647 500 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 TRIM71Q2Q1W2 868 aaKnown RBP16.05■□□□□ 0.16
HDAC4-205ENST00000454542 LETM2Q2VYF4 491 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 HABP4Q5JVS0 413 aaKnown RBP16.05■□□□□ 0.16
HDAC4-205ENST00000454542 PLPPR4Q7Z2D5 763 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 CCDC60Q8IWA6 550 aaPredicted RBP16.05■□□□□ 0.16
HDAC4-205ENST00000454542 CAGE1Q8TC20 777 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 VWCEQ96DN2 955 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 NAP1L4Q99733 375 aaKnown RBP16.05■□□□□ 0.16
HDAC4-205ENST00000454542 PPP1R12CQ9BZL4 782 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 SMARCAD1Q9H4L7 1026 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 DDX25Q9UHL0 483 aaKnown RBP16.05■□□□□ 0.16
HDAC4-205ENST00000454542 SIP14410 1827 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 TRIOBPQ9H2D6 2365 aa16.05■□□□□ 0.16
HDAC4-205ENST00000454542 SCN5AQ14524 2016 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 C17orf102A2RUQ5 167 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 DDX39AO00148 427 aaKnown RBP16.04■□□□□ 0.16
HDAC4-205ENST00000454542 WNT7AO00755 349 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 CYP2C18P33260 490 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 EPHB4P54760 987 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 FPGSQ05932 587 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 PTK7Q13308 1070 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 SERINC5Q86VE9 423 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 TDHQ8IZJ6 230 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 FAM184AQ8NB25 1140 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 LMBR1Q8WVP7 490 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 WNT8BQ93098 351 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 UBE2OQ9C0C9 1292 aaKnown RBP16.04■□□□□ 0.16
HDAC4-205ENST00000454542 FOXP1Q9H334 677 aaPredicted RBP16.04■□□□□ 0.16
HDAC4-205ENST00000454542 RNPEPQ9H4A4 650 aa16.04■□□□□ 0.16
HDAC4-205ENST00000454542 NRCAMQ92823 1304 aa16.03■□□□□ 0.16
HDAC4-205ENST00000454542 MBLAC1A4D2B0 266 aaPredicted RBP16.03■□□□□ 0.16
HDAC4-205ENST00000454542 TBX3O15119 743 aa16.03■□□□□ 0.16
HDAC4-205ENST00000454542 SLC26A2P50443 739 aa16.03■□□□□ 0.16
HDAC4-205ENST00000454542 ZNF200P98182 395 aaPredicted RBP16.03■□□□□ 0.16
HDAC4-205ENST00000454542 GUCY1B3Q02153 619 aa16.03■□□□□ 0.16
HDAC4-205ENST00000454542 PPIGQ13427 754 aaKnown RBP eCLIP16.03■□□□□ 0.162e-8■□□□□ 10
HDAC4-205ENST00000454542 LRCH2Q5VUJ6 765 aa16.03■□□□□ 0.16
HDAC4-205ENST00000454542 TRAF7Q6Q0C0 670 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms