RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 ZNF341Q9BYN7 854 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 ACBD3Q9H3P7 528 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 CCPG1Q9ULG6 757 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.18□□□□□ -0.3
SMPD4-213ENST00000454468 ABCB11O95342 1321 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 PVALEFA0A1B0GWK0 134 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 A0A1W2PRG0 241 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 TESPA1A2RU30 521 aaPredicted RBP13.18□□□□□ -0.3
SMPD4-213ENST00000454468 ARHGEF35A5YM69 484 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 LRRC10BA6NIK2 292 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 PSMD14O00487 310 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 H2AFXP16104 143 aaPredicted RBP13.18□□□□□ -0.3
SMPD4-213ENST00000454468 GCFC2P16383 781 aaKnown RBP13.18□□□□□ -0.3
SMPD4-213ENST00000454468 EIF2AK2P19525 551 aaKnown RBP13.18□□□□□ -0.3
SMPD4-213ENST00000454468 PPP1R2P41236 205 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 KCNH2Q12809 1159 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 HS2ST1Q7LGA3 356 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 HDXQ7Z353 690 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 ZNF577Q9BSK1 485 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 GLIS2Q9BZE0 524 aaPredicted RBP13.18□□□□□ -0.3
SMPD4-213ENST00000454468 FHOD1Q9Y613 1164 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 CHD4Q14839 1912 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 ITIH6Q6UXX5 1313 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 LRRN2O75325 713 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 SASH3O75995 380 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 SLC9A1P19634 815 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 FXR2P51116 673 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 PDIA5Q14554 519 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 WHAMMP3Q1A5X7 153 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 DACT2Q5SW24 774 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 MS4A14Q96JA4 679 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 ZDHHC15Q96MV8 337 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 GBP3Q9H0R5 595 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 REXO2Q9Y3B8 237 aaKnown RBP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 HYOU1Q9Y4L1 999 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 PLCH1Q4KWH8 1693 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 hCG_1984214I3L0E3 225 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 EXOC3O60645 756 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 N4BP1O75113 896 aaKnown RBP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 EPB41P11171 864 aaKnown RBP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 ARHGAP25P42331 645 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 CASP5P51878 434 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 JAG1P78504 1218 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 GJB7Q6PEY0 223 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 SND1Q7KZF4 910 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 FAM178BQ8IXR5 827 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 NIM1KQ8IY84 436 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 ZNF713Q8N859 430 aaPredicted RBP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 CAPN6Q9Y6Q1 641 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 A0A1W2PQC6 194 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 ESYT2A0FGR8 921 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 CCDC169A6NNP5 214 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 FLOT1O75955 427 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 PLA2G4AP47712 749 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 CKAP4Q07065 602 aaKnown RBP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 NAA35Q5VZE5 725 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 C15orf52Q6ZUT6 534 aaKnown RBP13.17□□□□□ -0.3
SMPD4-213ENST00000454468 FLAD1Q8NFF5 587 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 NOX5Q96PH1 765 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 TRIM31Q9BZY9 425 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 GOPCQ9HD26 462 aa13.17□□□□□ -0.3
SMPD4-213ENST00000454468 IRS2Q9Y4H2 1338 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 CYP11B2P19099 503 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 LRRC63Q05C16 580 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 TERF2Q15554 542 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 DCAF4Q8WV16 495 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 RIN2Q8WYP3 895 aaPredicted RBP13.16□□□□□ -0.3
SMPD4-213ENST00000454468 EIF2AK1Q9BQI3 630 aaKnown RBP13.16□□□□□ -0.3
SMPD4-213ENST00000454468 ARHGAP20Q9P2F6 1191 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 ESYT3A0FGR9 886 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 CAPN2P17655 700 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 CASP4P49662 377 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 VAV2P52735 878 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 EXOC3L4Q17RC7 722 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 ZFYVE27Q5T4F4 411 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 WDR78Q5VTH9 848 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 CENPPQ6IPU0 288 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 TTLL6Q8N841 843 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 U2AF1L4Q8WU68 220 aaKnown RBP13.16□□□□□ -0.3
SMPD4-213ENST00000454468 AGBL1Q96MI9 1066 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 DDX60Q8IY21 1712 aaKnown RBP13.16□□□□□ -0.3
SMPD4-213ENST00000454468 AHDC1Q5TGY3 1603 aaPredicted RBP13.16□□□□□ -0.3
SMPD4-213ENST00000454468 POTEB2H3BUK9 544 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 MSH4O15457 936 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 GFPT2O94808 682 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 TRIM49P0CI25 452 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 TRIM49CP0CI26 452 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 GUCY2FP51841 1108 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 TNIP1Q15025 636 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 MIIPQ5JXC2 388 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 IQCEQ6IPM2 695 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 ZNF507Q8TCN5 953 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 COG1Q8WTW3 980 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 CCDC127Q96BQ5 260 aa13.16□□□□□ -0.3
SMPD4-213ENST00000454468 RAVER2Q9HCJ3 691 aaKnown RBP13.16□□□□□ -0.3
SMPD4-213ENST00000454468 TTC19Q6DKK2 380 aaPredicted RBP13.15□□□□□ -0.3
SMPD4-213ENST00000454468 CHURC1Q8WUH1 139 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 GLT8D2Q9H1C3 349 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 FAN1Q9Y2M0 1017 aa13.15□□□□□ -0.3
SMPD4-213ENST00000454468 CEP104O60308 925 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms