RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DBNDD1Q9H9R9 158 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 MED4Q9NPJ6 270 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 AJAP1Q9UKB5 411 aaPredicted RBP9.51□□□□□ -0.89
USP40-203ENST00000427112 ATP8A1Q9Y2Q0 1164 aa9.51□□□□□ -0.89
USP40-203ENST00000427112 PKD1L3Q7Z443 1732 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 PHF20L1A8MW92 1017 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 TISP43B9A030 160 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 SEMA3EO15041 775 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 ORC4O43929 436 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 GCNT3O95395 438 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 POLD1P28340 1107 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 GNA11P29992 359 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 PTK2Q05397 1052 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 MAN2A1Q16706 1144 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 SLC9C1Q4G0N8 1177 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 ARL6IP4Q66PJ3 421 aaKnown RBP9.5□□□□□ -0.89
USP40-203ENST00000427112 OTUD6AQ7L8S5 288 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 DAAM2Q86T65 1068 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 FAM114A1Q8IWE2 563 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 ADGRF4Q8IZF3 695 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 ZNF233A6NK53 670 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 PPP1R11O60927 126 aaPredicted RBP9.5□□□□□ -0.89
USP40-203ENST00000427112 YY1P25490 414 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 SP4Q02446 784 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 IFFO1Q0D2I5 559 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 KRT25Q7Z3Z0 450 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 GLG1Q92896 1179 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 TTYH3Q9C0H2 523 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 NEUROG2Q9H2A3 272 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 DDX4Q9NQI0 724 aaKnown RBP9.5□□□□□ -0.89
USP40-203ENST00000427112 MYO1AQ9UBC5 1043 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 NOVA2Q9UNW9 492 aaKnown RBP9.5□□□□□ -0.89
USP40-203ENST00000427112 THRAP3Q9Y2W1 955 aaKnown RBP9.5□□□□□ -0.89
USP40-203ENST00000427112 ECM29Q5VYK3 1845 aa9.5□□□□□ -0.89
USP40-203ENST00000427112 TTI1O43156 1089 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 CDC25CP30307 473 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 TRAPPC10P48553 1259 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 KCNH2Q12809 1159 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 ASIC2Q16515 512 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 CFAP221Q4G0U5 840 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 SFR1Q86XK3 245 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 TPH2Q8IWU9 490 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 CNBD1Q8NA66 436 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 EHBP1Q8NDI1 1231 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 PSTPIP2Q9H939 334 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 SIK3Q9Y2K2 1263 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 CTNNA1P35221 906 aaKnown RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 TRIP13Q15645 432 aaPredicted RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 WDR93Q6P2C0 686 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 PDXDC1Q6P996 788 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 TADA2BQ86TJ2 420 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 TBC1D31Q96DN5 1066 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 BHMT2Q9H2M3 363 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 PLAGL2Q9UPG8 496 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 ZC3H4Q9UPT8 1303 aaKnown RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 CICQ96RK0 1608 aaPredicted RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 PALM3A6NDB9 673 aaPredicted RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 KRIT1O00522 736 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 PLA2G4BP0C869 781 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 NMT1P30419 496 aaKnown RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 MAGEA9P43362 315 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 HP1BP3Q5SSJ5 553 aaPredicted RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 CCDC174Q6PII3 467 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 NSMFQ6X4W1 530 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 CAPN12Q6ZSI9 719 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 DGKHQ86XP1 1220 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 GLYCTKQ8IVS8 523 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 BTBD6Q96KE9 485 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 USP20Q9Y2K6 914 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 PCDHA1Q9Y5I3 950 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 COL4A3BPQ9Y5P4 624 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 TRPM3Q9HCF6 1732 aaPredicted RBP9.49□□□□□ -0.89
USP40-203ENST00000427112 KIF1AQ12756 1690 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 CEP350Q5VT06 3117 aa9.49□□□□□ -0.89
USP40-203ENST00000427112 MED24O75448 989 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 PDHBP11177 359 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 RPS6KA1Q15418 735 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 KRT71Q3SY84 523 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 RAD54LQ92698 747 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 CCSER1Q9C0I3 900 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 EMILIN3Q9NT22 766 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 USP40Q9NVE5 1235 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 CD2APQ9Y5K6 639 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 A0A1W2PQC6 194 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 RPSAP08865 295 aaKnown RBP9.48□□□□□ -0.89
USP40-203ENST00000427112 GNAQP50148 359 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 CORO7P57737 925 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 LRRC14Q15048 493 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 PPP2R5BQ15173 497 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 SPRED3Q2MJR0 410 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 DAB2IPQ5VWQ8 1189 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 PPP1R18Q6NYC8 613 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 AENQ8WTP8 325 aaKnown RBP9.48□□□□□ -0.89
USP40-203ENST00000427112 BAP1Q92560 729 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 CD209Q9NNX6 404 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.48□□□□□ -0.89
USP40-203ENST00000427112 TMEM150BA6NC51 233 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 CFBP00751 764 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 NR1D1P20393 614 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 ERVK-9P63128 1117 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms